PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
Bdis03G0057310.1 brachypodium_distachyon Bdis03G0057310.1
Bdis03G0057310.2 brachypodium_distachyon Bdis03G0057310.2
Bdis03G0057310.3 brachypodium_distachyon Bdis03G0057310.3
Bdis03G0057310.4 brachypodium_distachyon Bdis03G0057310.4
Bdis03G0057310.5 brachypodium_distachyon Bdis03G0057310.5
Bdis03G0057310.6 brachypodium_distachyon Bdis03G0057310.6
Bdis03G0057310.7 brachypodium_distachyon Bdis03G0057310.7
Bdis03G0057310.8 brachypodium_distachyon Bdis03G0057310.8
Bdis03G0057310.9 brachypodium_distachyon Bdis03G0057310.9
Bdis03G0057320.1 brachypodium_distachyon Bdis03G0057320.1
Bdis03G0057330.1 brachypodium_distachyon Bdis03G0057330.1
Bdis03G0057350.1 brachypodium_distachyon Bdis03G0057350.1
Bdis05G0017120.1 brachypodium_distachyon Bdis05G0017120.1
BhybBhD20153790.1 brachypodium_hybridum BhybBhD20153790.1
BhybBhD30256190.1 brachypodium_hybridum BhybBhD30256190.1
BhybBhD30258690.1 brachypodium_hybridum BhybBhD30258690.1
BhybBhD30259230.1 brachypodium_hybridum BhybBhD30259230.1
BhybBhD30259250.1 brachypodium_hybridum BhybBhD30259250.1
BhybBhD30259260.1 brachypodium_hybridum BhybBhD30259260.1
BhybBhD30259270.1 brachypodium_hybridum BhybBhD30259270.1
BhybBhD50361130.1 brachypodium_hybridum BhybBhD50361130.1
BhybBhS40534710.1 brachypodium_hybridum BhybBhS40534710.1
BhybBhS40534720.1 brachypodium_hybridum BhybBhS40534720.1
BhybBhS40534730.1 brachypodium_hybridum BhybBhS40534730.1
BhybBhS40534740.1 brachypodium_hybridum BhybBhS40534740.1
BhybBhS40535220.1 brachypodium_hybridum BhybBhS40535220.1
BhybBhS40537520.1 brachypodium_hybridum BhybBhS40537520.1
BhybBhS80667230.1 brachypodium_hybridum BhybBhS80667230.1
BhybBhS90687040.1 brachypodium_hybridum BhybBhS90687040.1
brachypodium_mexicanum_Brame.04PG261700.1.p brachypodium_mexicanum brachypodium_mexicanum_Brame.04PG261700.1.p