PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Triticum turgidum
Aegilops tauschii
Triticum aestivum
Hordeum vulgare
Related Modules
Flavonoid pathway
Phenylpropanoid pathway
Rosmarinic acid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
PAL 7015 C4H 464 4CL 25907
Flavonoid scaffold formation
CHS 11738 CHI 3089
Flavone and isoflavonoid branches
FNS 359 IFS 541 IFR 11814
Dihydroflavonol branches
F3H 4697 F3'H/CYP75B 1332 F3'5'H/CYP75A 247 FLS 124
Anthocyanin and proanthocyanidin branches
DFR 1310 ANS/LDOX 1019 UFGT 106747 ANR 1183
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Entry backbone
PAL 7015 C4H/CYP73A 432 4CL 25910
Hydroxycinnamoyl and monolignol backbone
HCT 14877 C3'H/CYP98A 10198 CSE 29610 CCoAOMT 6839 CCR 4440
S/G branch and monolignol formation
F5H/CYP84A 306 COMT 22394 CAD 17134
Oxidative polymerization
LAC 28156 POD 122923
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
PAL 7015 C4H 48992 4CL 25914
Tyrosine acceptor branch
TAT 14219 HPPR 5065
Condensation and hydroxylation
RAS 13433 CPR 5870
Family Gene List
GeneSpeciesProtein ID
bretschneidera_sinensis_BsiG0018756.1 bretschneidera_sinensis bretschneidera_sinensis_BsiG0018756.1
bretschneidera_sinensis_BsiG0018757.1 bretschneidera_sinensis bretschneidera_sinensis_BsiG0018757.1
bretschneidera_sinensis_BsiG0023144.1 bretschneidera_sinensis bretschneidera_sinensis_BsiG0023144.1
bretschneidera_sinensis_BsiG0024011.1 bretschneidera_sinensis bretschneidera_sinensis_BsiG0024011.1
bretschneidera_sinensis_BsiG0027269.1 bretschneidera_sinensis bretschneidera_sinensis_BsiG0027269.1
bretschneidera_sinensis_BsiG0028021.1 bretschneidera_sinensis bretschneidera_sinensis_BsiG0028021.1
bretschneidera_sinensis_BsiG0037100.1 bretschneidera_sinensis bretschneidera_sinensis_BsiG0037100.1
bretschneidera_sinensis_BsiG0043406.1 bretschneidera_sinensis bretschneidera_sinensis_BsiG0043406.1
bretschneidera_sinensis_BsiG0043407.1 bretschneidera_sinensis bretschneidera_sinensis_BsiG0043407.1
bruguiera_cylindrica_evm.model.Scaffold_12_RagTag.329 bruguiera_cylindrica bruguiera_cylindrica_evm.model.Scaffold_12_RagTag.329
bruguiera_cylindrica_evm.model.Scaffold_1_RagTag.1270 bruguiera_cylindrica bruguiera_cylindrica_evm.model.Scaffold_1_RagTag.1270
bruguiera_cylindrica_evm.model.Scaffold_2_RagTag.704 bruguiera_cylindrica bruguiera_cylindrica_evm.model.Scaffold_2_RagTag.704
bruguiera_cylindrica_evm.model.Scaffold_4_RagTag.1174 bruguiera_cylindrica bruguiera_cylindrica_evm.model.Scaffold_4_RagTag.1174
bruguiera_cylindrica_evm.model.Scaffold_4_RagTag.1329 bruguiera_cylindrica bruguiera_cylindrica_evm.model.Scaffold_4_RagTag.1329
bruguiera_cylindrica_evm.model.Scaffold_4_RagTag.699 bruguiera_cylindrica bruguiera_cylindrica_evm.model.Scaffold_4_RagTag.699
bruguiera_cylindrica_evm.model.Scaffold_6_RagTag.1109 bruguiera_cylindrica bruguiera_cylindrica_evm.model.Scaffold_6_RagTag.1109
bruguiera_cylindrica_evm.model.Scaffold_8_RagTag.88 bruguiera_cylindrica bruguiera_cylindrica_evm.model.Scaffold_8_RagTag.88
bruguiera_cylindrica_evm.model.Scaffold_9_RagTag.399 bruguiera_cylindrica bruguiera_cylindrica_evm.model.Scaffold_9_RagTag.399
bruguiera_parviflora_evm.model.Scaffold_18.466 bruguiera_parviflora bruguiera_parviflora_evm.model.Scaffold_18.466
bruguiera_parviflora_evm.model.Scaffold_2.678 bruguiera_parviflora bruguiera_parviflora_evm.model.Scaffold_2.678
bruguiera_parviflora_evm.model.Scaffold_296.1 bruguiera_parviflora bruguiera_parviflora_evm.model.Scaffold_296.1
bruguiera_parviflora_evm.model.Scaffold_297.1 bruguiera_parviflora bruguiera_parviflora_evm.model.Scaffold_297.1
bruguiera_parviflora_evm.model.Scaffold_4.1150 bruguiera_parviflora bruguiera_parviflora_evm.model.Scaffold_4.1150
bruguiera_parviflora_evm.model.Scaffold_4.1304 bruguiera_parviflora bruguiera_parviflora_evm.model.Scaffold_4.1304
bruguiera_parviflora_evm.model.Scaffold_5.487 bruguiera_parviflora bruguiera_parviflora_evm.model.Scaffold_5.487
bruguiera_sexangula_evm.model.48742.2 bruguiera_sexangula bruguiera_sexangula_evm.model.48742.2
bruguiera_sexangula_evm.model.Scaffold_1_RagTag.1549 bruguiera_sexangula bruguiera_sexangula_evm.model.Scaffold_1_RagTag.1549
bruguiera_sexangula_evm.model.Scaffold_2_RagTag.881 bruguiera_sexangula bruguiera_sexangula_evm.model.Scaffold_2_RagTag.881
bruguiera_sexangula_evm.model.Scaffold_4_RagTag.1608 bruguiera_sexangula bruguiera_sexangula_evm.model.Scaffold_4_RagTag.1608
bruguiera_sexangula_evm.model.Scaffold_4_RagTag.1804 bruguiera_sexangula bruguiera_sexangula_evm.model.Scaffold_4_RagTag.1804