PlantSME Plant secondary metabolism enzyme database
PMK

PMK

Atlas summary family PMK.

Lineage Coverage
Detected in 734 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Humulus lupulus
Arachis hypogaea
Arachis monticola
Panax quinquefolius
Related Modules
Terpenoid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Terpenoid pathway 1501 current-family members Bergman et al. 2024; Karunanithi & Zerbe 2019; Zhang et al. 2023; Lu et al. 2023; Moghe et al. 2023
MVA precursor branch
AACT 337 HMGS 2158 HMGR 3794 MVK 1409 PMK 1501 MVD 1588
MEP precursor branch
DXS 4421 DXR 1551 MCT/IspD 1192 CMK/IspE 1150 MDS/IspF 1197 HDS/IspG 1612 HDR/IspH 1720
IPP/DMAPP and prenyl diphosphate extension
IDI 1579 GPPS 135 FPPS 5839 GGPPS 100
Skeleton formation and tailoring
TPS 36208 CYP71 13248 CYP76 46690 UGT 123661 BAHD 149019
Family Gene List
GeneSpeciesProtein ID
fragaria_chiloensis_maker-5A-augustus-gene-132.0-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5A-augustus-gene-132.0-mRNA-1
fragaria_chiloensis_maker-5B-augustus-gene-145.2-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5B-augustus-gene-145.2-mRNA-1
fragaria_chiloensis_maker-5C-augustus-gene-151.45-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5C-augustus-gene-151.45-mRNA-1
fragaria_chiloensis_maker-5D-augustus-gene-129.97-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5D-augustus-gene-129.97-mRNA-1
fragaria_chiloensis_maker-6A-augustus-gene-15.176-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6A-augustus-gene-15.176-mRNA-1
fragaria_chiloensis_maker-6C-augustus-gene-350.48-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6C-augustus-gene-350.48-mRNA-1
fragaria_chiloensis_maker-6D-augustus-gene-327.173-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6D-augustus-gene-327.173-mRNA-1
fragaria_iinumae_evm.model.scaf_14.816 fragaria_iinumae fragaria_iinumae_evm.model.scaf_14.816
fragaria_mandshurica_evm.model.chr4.626 fragaria_mandshurica fragaria_mandshurica_evm.model.chr4.626
fragaria_mandshurica_evm.model.chr5.2127 fragaria_mandshurica fragaria_mandshurica_evm.model.chr5.2127
fragaria_mandshurica_evm.model.chr6.4584 fragaria_mandshurica fragaria_mandshurica_evm.model.chr6.4584
FnilGWHABKC000000010052680.1 fragaria_nilgerrensis FnilGWHABKC000000010052680.1
FnilGWHABKC000000050200770.1 fragaria_nilgerrensis FnilGWHABKC000000050200770.1
fragaria_nipponica_maker-chr3-augustus-gene-233.5-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr3-augustus-gene-233.5-mRNA-1
fragaria_nipponica_maker-chr5-augustus-gene-184.14-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr5-augustus-gene-184.14-mRNA-1
fragaria_nipponica_maker-chr6-augustus-gene-20.94-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr6-augustus-gene-20.94-mRNA-1
fragaria_nubicola_evm.model.ctg104.218 fragaria_nubicola fragaria_nubicola_evm.model.ctg104.218
fragaria_nubicola_evm.model.ctg147.14 fragaria_nubicola fragaria_nubicola_evm.model.ctg147.14
fragaria_nubicola_evm.model.ctg158.30 fragaria_nubicola fragaria_nubicola_evm.model.ctg158.30
fragaria_nubicola_evm.model.ctg49.285 fragaria_nubicola fragaria_nubicola_evm.model.ctg49.285
Fves05G0019220.1 fragaria_vesca Fves05G0019220.1
Fves05G0028350.1 fragaria_vesca Fves05G0028350.1
Fves06G0061790.1 fragaria_vesca Fves06G0061790.1
Fves06G0061790.2 fragaria_vesca Fves06G0061790.2
fragaria_x_ananassa_maker-Fvb5-1-augustus-gene-151.32-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-1-augustus-gene-151.32-mRNA-1
fragaria_x_ananassa_maker-Fvb5-1-snap-gene-192.52-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-1-snap-gene-192.52-mRNA-1
fragaria_x_ananassa_maker-Fvb5-2-augustus-gene-143.42-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-2-augustus-gene-143.42-mRNA-1
fragaria_x_ananassa_maker-Fvb5-3-augustus-gene-136.32-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-3-augustus-gene-136.32-mRNA-1
fragaria_x_ananassa_maker-Fvb5-4-augustus-gene-125.27-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-4-augustus-gene-125.27-mRNA-1
fragaria_x_ananassa_maker-Fvb6-1-augustus-gene-18.56-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb6-1-augustus-gene-18.56-mRNA-1