PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr17.ver1.0.g242640.p01 vitis_berlandieri_x_riparia vitis_berlandieri_x_riparia_VITVixKober5BB_v1.0.hap_Vri.chr17.ver1.0.g242640.p01
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g013810.p01 vitis_berlandieri_x_rupestris vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g013810.p01
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr04.ver1.0.g050110.p01 vitis_berlandieri_x_rupestris vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr04.ver1.0.g050110.p01
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g166200.p01 vitis_berlandieri_x_rupestris vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g166200.p01
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr17.ver1.0.g238840.p01 vitis_berlandieri_x_rupestris vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr17.ver1.0.g238840.p01
vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr17.ver1.0.g238890.p01 vitis_berlandieri_x_rupestris vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr17.ver1.0.g238890.p01
vitis_labrusca_maker-1-snap-gene-214.38-mRNA-1 vitis_labrusca vitis_labrusca_maker-1-snap-gene-214.38-mRNA-1
vitis_labrusca_maker-13-augustus-gene-33.24-mRNA-1 vitis_labrusca vitis_labrusca_maker-13-augustus-gene-33.24-mRNA-1
vitis_labrusca_maker-13-snap-gene-34.34-mRNA-1 vitis_labrusca vitis_labrusca_maker-13-snap-gene-34.34-mRNA-1
vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr01.ver1.0.g015680.p01 vitis_rupestris_x_riparia vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr01.ver1.0.g015680.p01
vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr17.ver1.0.g283760.p01 vitis_rupestris_x_riparia vitis_rupestris_x_riparia_VITVix101-14Mgt_v1.0.hap_Vrp.chr17.ver1.0.g283760.p01
VIT_01s0010g03940.t01 vitis_vinifera VIT_01s0010g03940.t01
VIT_05s0062g00670.t01 vitis_vinifera VIT_05s0062g00670.t01
VIT_17s0000g04400.t01 vitis_vinifera VIT_17s0000g04400.t01
Vcarscaffold_10007390.1 volvox_carteri Vcarscaffold_10007390.1
warburgia_ugandensis_GWHPDQZE001828 warburgia_ugandensis warburgia_ugandensis_GWHPDQZE001828
warburgia_ugandensis_GWHPDQZE002912 warburgia_ugandensis warburgia_ugandensis_GWHPDQZE002912
warburgia_ugandensis_GWHPDQZE005829 warburgia_ugandensis warburgia_ugandensis_GWHPDQZE005829
Wmir10G0002740 welwitschia_mirabilis Wmir10G0002740
WmirUNG0007480 welwitschia_mirabilis WmirUNG0007480
wurfbainia_longiligularis_WL01Gene05079 wurfbainia_longiligularis wurfbainia_longiligularis_WL01Gene05079
wurfbainia_longiligularis_WL01Gene07766 wurfbainia_longiligularis wurfbainia_longiligularis_WL01Gene07766
wurfbainia_longiligularis_WL01Gene32523 wurfbainia_longiligularis wurfbainia_longiligularis_WL01Gene32523
wurfbainia_villosa_Wv_016599.m1 wurfbainia_villosa wurfbainia_villosa_Wv_016599.m1
zantedeschia_elliottiana_Zh04G012500.1 zantedeschia_elliottiana zantedeschia_elliottiana_Zh04G012500.1
zantedeschia_elliottiana_Zh05G218700.1 zantedeschia_elliottiana zantedeschia_elliottiana_Zh05G218700.1
zanthoxylum_bungeanum_ZbB_C10.Contig272.53 zanthoxylum_bungeanum zanthoxylum_bungeanum_ZbB_C10.Contig272.53
zanthoxylum_bungeanum_ZbB_C26.Contig619.35 zanthoxylum_bungeanum zanthoxylum_bungeanum_ZbB_C26.Contig619.35
zanthoxylum_bungeanum_ZbB_C30.Contig288.337 zanthoxylum_bungeanum zanthoxylum_bungeanum_ZbB_C30.Contig288.337
zanthoxylum_bungeanum_ZbC_C10.Contig253.15 zanthoxylum_bungeanum zanthoxylum_bungeanum_ZbC_C10.Contig253.15