PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
alstonia_scholaris_tjs34746 alstonia_scholaris alstonia_scholaris_tjs34746
AcruScioBoG_102835_HRSCAF_1030590022370.1 amaranthus_cruentus AcruScioBoG_102835_HRSCAF_1030590022370.1
AcruScioBoG_102836_HRSCAF_1030720030650.1 amaranthus_cruentus AcruScioBoG_102836_HRSCAF_1030720030650.1
AcruScioBoG_3703_HRSCAF_37190191420.1 amaranthus_cruentus AcruScioBoG_3703_HRSCAF_37190191420.1
AMhypScaffold_10011010.1 amaranthus_hypochondriacus AMhypScaffold_10011010.1
AMhypScaffold_10024010.1 amaranthus_hypochondriacus AMhypScaffold_10024010.1
AMhypScaffold_120058720.1 amaranthus_hypochondriacus AMhypScaffold_120058720.1
AMhypScaffold_140086220.1 amaranthus_hypochondriacus AMhypScaffold_140086220.1
AMhypScaffold_20119570.1 amaranthus_hypochondriacus AMhypScaffold_20119570.1
AMhypScaffold_30137570.1 amaranthus_hypochondriacus AMhypScaffold_30137570.1
AMhypScaffold_30141740.1 amaranthus_hypochondriacus AMhypScaffold_30141740.1
AMhypScaffold_30148190.1 amaranthus_hypochondriacus AMhypScaffold_30148190.1
AMhypScaffold_30148210.1 amaranthus_hypochondriacus AMhypScaffold_30148210.1
MAKER_05189-RA amaranthus_palmeri MAKER_05189-RA
MAKER_19655-RA amaranthus_palmeri MAKER_19655-RA
MAKER_28252-RA amaranthus_palmeri MAKER_28252-RA
MAKER_32836-RA amaranthus_palmeri MAKER_32836-RA
amaranthus_tricolor_g12198.t1 amaranthus_tricolor amaranthus_tricolor_g12198.t1
amaranthus_tricolor_g12677.t1 amaranthus_tricolor amaranthus_tricolor_g12677.t1
amaranthus_tricolor_g18838.t1 amaranthus_tricolor amaranthus_tricolor_g18838.t1
amaranthus_tricolor_g19301.t1 amaranthus_tricolor amaranthus_tricolor_g19301.t1
amaranthus_tricolor_g26960.t1 amaranthus_tricolor amaranthus_tricolor_g26960.t1
amaranthus_tricolor_g26963.t1 amaranthus_tricolor amaranthus_tricolor_g26963.t1
amaranthus_tricolor_g2703.t1 amaranthus_tricolor amaranthus_tricolor_g2703.t1
amaranthus_tricolor_g5234.t1 amaranthus_tricolor amaranthus_tricolor_g5234.t1
amaranthus_tricolor_g8063.t1 amaranthus_tricolor amaranthus_tricolor_g8063.t1
At.01g009820-v1.1.a1 amaranthus_tuberculatus At.01g009820-v1.1.a1
At.01g026900-v1.1.a1 amaranthus_tuberculatus At.01g026900-v1.1.a1
At.02g142130-v1.1.a1 amaranthus_tuberculatus At.02g142130-v1.1.a1
At.03g164530-v1.1.a1 amaranthus_tuberculatus At.03g164530-v1.1.a1