PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
fragaria_nipponica_maker-chr5-augustus-gene-236.7-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr5-augustus-gene-236.7-mRNA-1
fragaria_nubicola_evm.model.ctg154.600 fragaria_nubicola fragaria_nubicola_evm.model.ctg154.600
fragaria_nubicola_evm.model.ctg179.40 fragaria_nubicola fragaria_nubicola_evm.model.ctg179.40
fragaria_nubicola_evm.model.ctg81.164 fragaria_nubicola fragaria_nubicola_evm.model.ctg81.164
fragaria_nubicola_evm.model.ctg82.590 fragaria_nubicola fragaria_nubicola_evm.model.ctg82.590
Fves01G0035700.1 fragaria_vesca Fves01G0035700.1
Fves01G0035700.2 fragaria_vesca Fves01G0035700.2
Fves04G0033760.1 fragaria_vesca Fves04G0033760.1
Fves04G0033760.2 fragaria_vesca Fves04G0033760.2
Fves04G0046270.1 fragaria_vesca Fves04G0046270.1
Fves05G0021390.1 fragaria_vesca Fves05G0021390.1
fragaria_x_ananassa_augustus_masked-Fvb5-4-processed-gene-83.3-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_augustus_masked-Fvb5-4-processed-gene-83.3-mRNA-1
fragaria_x_ananassa_maker-Fvb1-1-augustus-gene-244.39-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb1-1-augustus-gene-244.39-mRNA-1
fragaria_x_ananassa_maker-Fvb1-1-augustus-gene-5.10-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb1-1-augustus-gene-5.10-mRNA-1
fragaria_x_ananassa_maker-Fvb1-4-augustus-gene-182.36-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb1-4-augustus-gene-182.36-mRNA-1
fragaria_x_ananassa_maker-Fvb1-4-augustus-gene-29.59-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb1-4-augustus-gene-29.59-mRNA-1
fragaria_x_ananassa_maker-Fvb4-1-snap-gene-197.51-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb4-1-snap-gene-197.51-mRNA-1
fragaria_x_ananassa_maker-Fvb4-3-augustus-gene-105.27-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb4-3-augustus-gene-105.27-mRNA-1
fragaria_x_ananassa_maker-Fvb4-3-augustus-gene-7.33-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb4-3-augustus-gene-7.33-mRNA-1
fragaria_x_ananassa_maker-Fvb4-4-augustus-gene-73.30-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb4-4-augustus-gene-73.30-mRNA-1
fragaria_x_ananassa_maker-Fvb4-4-augustus-gene-9.37-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb4-4-augustus-gene-9.37-mRNA-1
fragaria_x_ananassa_maker-Fvb5-1-augustus-gene-114.32-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-1-augustus-gene-114.32-mRNA-1
fragaria_x_ananassa_maker-Fvb5-2-augustus-gene-104.33-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-2-augustus-gene-104.33-mRNA-1
fragaria_x_ananassa_maker-Fvb5-3-augustus-gene-177.34-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb5-3-augustus-gene-177.34-mRNA-1
fragaria_x_ananassa_snap_masked-Fvb1-2-processed-gene-262.6-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_snap_masked-Fvb1-2-processed-gene-262.6-mRNA-1
fragaria_x_ananassa_snap_masked-Fvb1-3-processed-gene-253.9-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_snap_masked-Fvb1-3-processed-gene-253.9-mRNA-1
fragaria_x_ananassa_snap_masked-Fvb4-2-processed-gene-7.21-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_snap_masked-Fvb4-2-processed-gene-7.21-mRNA-1
FexcContig15850055980.1 fraxinus_excelsior FexcContig15850055980.1
FexcContig15850055980.2 fraxinus_excelsior FexcContig15850055980.2
FexcContig20490093200.1 fraxinus_excelsior FexcContig20490093200.1