PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
fragaria_chiloensis_augustus_masked-4C-processed-gene-7.106-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-4C-processed-gene-7.106-mRNA-1
fragaria_chiloensis_augustus_masked-4D-processed-gene-207.56-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-4D-processed-gene-207.56-mRNA-1
fragaria_chiloensis_augustus_masked-5B-processed-gene-186.5-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-5B-processed-gene-186.5-mRNA-1
fragaria_chiloensis_maker-1A-augustus-gene-35.69-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-1A-augustus-gene-35.69-mRNA-1
fragaria_chiloensis_maker-4A-augustus-gene-8.136-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-4A-augustus-gene-8.136-mRNA-1
fragaria_chiloensis_maker-4A-augustus-gene-82.100-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-4A-augustus-gene-82.100-mRNA-1
fragaria_chiloensis_maker-4B-augustus-gene-7.15-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-4B-augustus-gene-7.15-mRNA-1
fragaria_chiloensis_maker-4B-augustus-gene-72.0-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-4B-augustus-gene-72.0-mRNA-1
fragaria_chiloensis_maker-5A-augustus-gene-93.101-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5A-augustus-gene-93.101-mRNA-1
fragaria_chiloensis_maker-5C-augustus-gene-108.47-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5C-augustus-gene-108.47-mRNA-1
fragaria_chiloensis_maker-5D-augustus-gene-91.7-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5D-augustus-gene-91.7-mRNA-1
fragaria_iinumae_evm.model.scaf_10.1068 fragaria_iinumae fragaria_iinumae_evm.model.scaf_10.1068
fragaria_iinumae_evm.model.scaf_14.284 fragaria_iinumae fragaria_iinumae_evm.model.scaf_14.284
fragaria_iinumae_evm.model.scaf_54.1160.1 fragaria_iinumae fragaria_iinumae_evm.model.scaf_54.1160.1
fragaria_iinumae_evm.model.scaf_68.160 fragaria_iinumae fragaria_iinumae_evm.model.scaf_68.160
fragaria_mandshurica_evm.model.chr0.1262 fragaria_mandshurica fragaria_mandshurica_evm.model.chr0.1262
fragaria_mandshurica_evm.model.chr0.601 fragaria_mandshurica fragaria_mandshurica_evm.model.chr0.601
fragaria_mandshurica_evm.model.chr1.1522 fragaria_mandshurica fragaria_mandshurica_evm.model.chr1.1522
fragaria_mandshurica_evm.model.chr4.2253 fragaria_mandshurica fragaria_mandshurica_evm.model.chr4.2253
fragaria_mandshurica_evm.model.chr4.2987 fragaria_mandshurica fragaria_mandshurica_evm.model.chr4.2987
fragaria_mandshurica_evm.model.chr5.1649 fragaria_mandshurica fragaria_mandshurica_evm.model.chr5.1649
fragaria_mandshurica_evm.model.chr7.1065 fragaria_mandshurica fragaria_mandshurica_evm.model.chr7.1065
FnilGWHABKC000000010015170.1 fragaria_nilgerrensis FnilGWHABKC000000010015170.1
FnilGWHABKC000000030123390.1 fragaria_nilgerrensis FnilGWHABKC000000030123390.1
FnilGWHABKC000000030134990.1 fragaria_nilgerrensis FnilGWHABKC000000030134990.1
FnilGWHABKC000000050195660.1 fragaria_nilgerrensis FnilGWHABKC000000050195660.1
FnilGWHABKC000000070271950.1 fragaria_nilgerrensis FnilGWHABKC000000070271950.1
fragaria_nipponica_augustus_masked-chr1-processed-gene-250.10-mRNA-1 fragaria_nipponica fragaria_nipponica_augustus_masked-chr1-processed-gene-250.10-mRNA-1
fragaria_nipponica_maker-chr4-augustus-gene-12.10-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr4-augustus-gene-12.10-mRNA-1
fragaria_nipponica_maker-chr4-augustus-gene-97.68-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr4-augustus-gene-97.68-mRNA-1