PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
FanaFAN_r2.3ch00021930 fragaria_ananassa FanaFAN_r2.3ch00021930
FanaFAN_r2.3ch00029680 fragaria_ananassa FanaFAN_r2.3ch00029680
FanaFAN_r2.3ch00159680 fragaria_ananassa FanaFAN_r2.3ch00159680
FanaFAN_r2.3ch00187980 fragaria_ananassa FanaFAN_r2.3ch00187980
FanaFAN_r2.3ch00193880 fragaria_ananassa FanaFAN_r2.3ch00193880
FanaFAN_r2.3ch1Ava0345000 fragaria_ananassa FanaFAN_r2.3ch1Ava0345000
FanaFAN_r2.3ch1Bia0405550 fragaria_ananassa FanaFAN_r2.3ch1Bia0405550
FanaFAN_r2.3ch1Bib0420280 fragaria_ananassa FanaFAN_r2.3ch1Bib0420280
FanaFAN_r2.3ch1X1a0428590 fragaria_ananassa FanaFAN_r2.3ch1X1a0428590
FanaFAN_r2.3ch1X1b0446230 fragaria_ananassa FanaFAN_r2.3ch1X1b0446230
FanaFAN_r2.3ch1X2a0469630 fragaria_ananassa FanaFAN_r2.3ch1X2a0469630
FanaFAN_r2.3ch4Ava0916280 fragaria_ananassa FanaFAN_r2.3ch4Ava0916280
FanaFAN_r2.3ch4Avb0939400 fragaria_ananassa FanaFAN_r2.3ch4Avb0939400
FanaFAN_r2.3ch4Bia0945170 fragaria_ananassa FanaFAN_r2.3ch4Bia0945170
FanaFAN_r2.3ch4Bia0952700 fragaria_ananassa FanaFAN_r2.3ch4Bia0952700
FanaFAN_r2.3ch4Bib0957620 fragaria_ananassa FanaFAN_r2.3ch4Bib0957620
FanaFAN_r2.3ch4Bib0965140 fragaria_ananassa FanaFAN_r2.3ch4Bib0965140
FanaFAN_r2.3ch4X1a0982160 fragaria_ananassa FanaFAN_r2.3ch4X1a0982160
FanaFAN_r2.3ch4X1b1018760 fragaria_ananassa FanaFAN_r2.3ch4X1b1018760
FanaFAN_r2.3ch4X2a1028150 fragaria_ananassa FanaFAN_r2.3ch4X2a1028150
FanaFAN_r2.3ch4X2b1037160 fragaria_ananassa FanaFAN_r2.3ch4X2b1037160
FanaFAN_r2.3ch5Ava1052370 fragaria_ananassa FanaFAN_r2.3ch5Ava1052370
FanaFAN_r2.3ch5Avb1097350 fragaria_ananassa FanaFAN_r2.3ch5Avb1097350
FanaFAN_r2.3ch5Bia1137300 fragaria_ananassa FanaFAN_r2.3ch5Bia1137300
FanaFAN_r2.3ch5Bib1164690 fragaria_ananassa FanaFAN_r2.3ch5Bib1164690
FanaFAN_r2.3ch5X1a1184860 fragaria_ananassa FanaFAN_r2.3ch5X1a1184860
FanaFAN_r2.3ch5X1b1209640 fragaria_ananassa FanaFAN_r2.3ch5X1b1209640
fragaria_chiloensis_augustus_masked-1A-processed-gene-187.7-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-1A-processed-gene-187.7-mRNA-1
fragaria_chiloensis_augustus_masked-1B-processed-gene-258.4-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-1B-processed-gene-258.4-mRNA-1
fragaria_chiloensis_augustus_masked-1D-processed-gene-31.45-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-1D-processed-gene-31.45-mRNA-1