PlantSME Plant secondary metabolism enzyme database

Amaranthus tuberculatus (amaranthus_tuberculatus)

/

Imported from atlas release summary for Amaranthus tuberculatus.

1072
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.15% Phenylpropanoid pathway 24.35% Alkaloid pathway 20.71% Flavonoid pathway 13.43% Rosmarinic acid pathway 10.35% Steroid pathway 4.01%
Family Distribution
C4H 6.62% POD 5.98% C3'H/CYP98A 5.94% BAHD 5.25% UGT 4.61% 4CL 4.21% 7DLGT 4.01% UFGT 3.97%
Other Families 59.41%
More Families (95)
CYP76 98 3.93% NMT 85 3.41% T3O 82 3.29% IFS 78 3.13% BR6OX2/CYP85A2 56 2.25% DWF4/CYP90B1 54 2.17% F3'H/CYP75B 50 2.01% F3H 42 1.68% CYP71 36 1.44% TRI/TRII 35 1.4% CODM/T6ODM 30 1.2% CAD 30 1.2% PYKS 29 1.16% STR 29 1.16% RAS 27 1.08% G8O/G8H 25 1.0% CSE 25 1.0% LAC 24 0.96% SMT1/SMT2/SMT3 24 0.96% T16H 23 0.92% IFR 23 0.92% F3'5'H/CYP75A 23 0.92% HCT 23 0.92% COMT 23 0.92% CAS 23 0.92% GS 19 0.76% CYP90D1 18 0.72% FNS 17 0.68% BR6OX1/CYP85A1 17 0.68% H6H 16 0.64% PMT 16 0.64% SLS 16 0.64% BBE 16 0.64% 7DLH 16 0.64% 16OMT 15 0.6% F5H/CYP84A 15 0.6% TPS 15 0.6% IO 13 0.52% ANR 13 0.52% GES 12 0.48% SGD 12 0.48% CYP51G1 12 0.48% CCR 11 0.44% CPR 11 0.44% TAT 10 0.4% CPD/CYP90A1 10 0.4% FPPS 10 0.4% 8HGO 8 0.32% NCS 8 0.32% TDC 7 0.28% COR 7 0.28% DFR 7 0.28% ANS/LDOX 7 0.28% AACT 7 0.28% TYDC_DDC 6 0.24% MPO 6 0.24% PAL 6 0.24% CCoAOMT 6 0.24% HPPR 6 0.24% GGPPS 6 0.24% CYP719 5 0.2% ISY 5 0.2% SQS/FDFT1 5 0.2% XMT_MXMT_DXMT 4 0.16% CHS 4 0.16% DET2 4 0.16% HMGR 4 0.16% DXR 4 0.16% MVD 4 0.16% CNMT 3 0.12% ROT3/CYP90C1 3 0.12% SQE 3 0.12% MVK 3 0.12% MDS/IspF 3 0.12% HMGS 3 0.12% DXS 3 0.12% CYP80B1 2 0.08% LAMT 2 0.08% CHI 2 0.08% FLS 2 0.08% HYD1 2 0.08% FK 2 0.08% MCT/IspD 2 0.08% IDI 2 0.08% ADC 1 0.04% CYP80F1 1 0.04% DWF1 1 0.04% CPI1 1 0.04% DWF5 1 0.04% SMO1/SMO2 1 0.04% DWF7 1 0.04% HDS/IspG 1 0.04% HDR/IspH 1 0.04% PMK 1 0.04% CMK/IspE 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 291 19 UGT (103) View species results
Phenylpropanoid pathway 261 11 POD (140) View species results
Alkaloid pathway 222 20 7DLGT (50) View species results
Flavonoid pathway 144 12 UFGT (92) View species results
Rosmarinic acid pathway 111 7 C4H (45) View species results
Steroid pathway 43 10 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 966 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 181 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
Reset
Gene Pathway Family Confidence Status Best Target
At.06g230530-v1.1.a1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
At.07g237230-v1.1.a1 Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
At.07g248030-v1.1.a1 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
At.08g265120-v1.1.a1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
At.09g274060-v1.1.a1 Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY