Amaranthus tuberculatus (amaranthus_tuberculatus)
/
Imported from atlas release summary for Amaranthus tuberculatus.
1072
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1072
Candidate Genes
C4H
6.62%
POD
5.98%
C3'H/CYP98A
5.94%
BAHD
5.25%
UGT
4.61%
4CL
4.21%
7DLGT
4.01%
UFGT
3.97%
Other Families
59.41%
More Families (95)
CYP76
98
3.93%
NMT
85
3.41%
T3O
82
3.29%
IFS
78
3.13%
BR6OX2/CYP85A2
56
2.25%
DWF4/CYP90B1
54
2.17%
F3'H/CYP75B
50
2.01%
F3H
42
1.68%
CYP71
36
1.44%
TRI/TRII
35
1.4%
CODM/T6ODM
30
1.2%
CAD
30
1.2%
PYKS
29
1.16%
STR
29
1.16%
RAS
27
1.08%
G8O/G8H
25
1.0%
CSE
25
1.0%
LAC
24
0.96%
SMT1/SMT2/SMT3
24
0.96%
T16H
23
0.92%
IFR
23
0.92%
F3'5'H/CYP75A
23
0.92%
HCT
23
0.92%
COMT
23
0.92%
CAS
23
0.92%
GS
19
0.76%
CYP90D1
18
0.72%
FNS
17
0.68%
BR6OX1/CYP85A1
17
0.68%
H6H
16
0.64%
PMT
16
0.64%
SLS
16
0.64%
BBE
16
0.64%
7DLH
16
0.64%
16OMT
15
0.6%
F5H/CYP84A
15
0.6%
TPS
15
0.6%
IO
13
0.52%
ANR
13
0.52%
GES
12
0.48%
SGD
12
0.48%
CYP51G1
12
0.48%
CCR
11
0.44%
CPR
11
0.44%
TAT
10
0.4%
CPD/CYP90A1
10
0.4%
FPPS
10
0.4%
8HGO
8
0.32%
NCS
8
0.32%
TDC
7
0.28%
COR
7
0.28%
DFR
7
0.28%
ANS/LDOX
7
0.28%
AACT
7
0.28%
TYDC_DDC
6
0.24%
MPO
6
0.24%
PAL
6
0.24%
CCoAOMT
6
0.24%
HPPR
6
0.24%
GGPPS
6
0.24%
CYP719
5
0.2%
ISY
5
0.2%
SQS/FDFT1
5
0.2%
XMT_MXMT_DXMT
4
0.16%
CHS
4
0.16%
DET2
4
0.16%
HMGR
4
0.16%
DXR
4
0.16%
MVD
4
0.16%
CNMT
3
0.12%
ROT3/CYP90C1
3
0.12%
SQE
3
0.12%
MVK
3
0.12%
MDS/IspF
3
0.12%
HMGS
3
0.12%
DXS
3
0.12%
CYP80B1
2
0.08%
LAMT
2
0.08%
CHI
2
0.08%
FLS
2
0.08%
HYD1
2
0.08%
FK
2
0.08%
MCT/IspD
2
0.08%
IDI
2
0.08%
ADC
1
0.04%
CYP80F1
1
0.04%
DWF1
1
0.04%
CPI1
1
0.04%
DWF5
1
0.04%
SMO1/SMO2
1
0.04%
DWF7
1
0.04%
HDS/IspG
1
0.04%
HDR/IspH
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 291 | 19 | UGT (103) | View species results |
| Phenylpropanoid pathway | 261 | 11 | POD (140) | View species results |
| Alkaloid pathway | 222 | 20 | 7DLGT (50) | View species results |
| Flavonoid pathway | 144 | 12 | UFGT (92) | View species results |
| Rosmarinic acid pathway | 111 | 7 | C4H (45) | View species results |
| Steroid pathway | 43 | 10 | CAS (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 966 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 181 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| At.00g037880-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| At.00g037890-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00025__sp_Q9SRZ4_PRX2C_ARATH |
| At.00g037940-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| At.00g037950-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| At.00g039940-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| At.00g042790-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| At.00g042810-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| At.00g042820-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| At.00g042920-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| At.01g001330-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| At.01g001470-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| At.01g002740-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| At.01g003860-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| At.01g004480-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00003__sp_A9PCL4_PRX2_POPTR |
| At.01g005650-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| At.01g018240-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| At.01g018250-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| At.01g018260-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| At.01g018300-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| At.01g019800-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| At.01g019810-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| At.01g020140-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| At.01g026370-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| At.01g026380-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| At.01g027400-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| At.01g050670-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| At.02g065630-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| At.02g068320-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| At.02g072480-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| At.02g073360-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| At.02g073500-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| At.02g074150-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| At.02g076330-v1.1.a1 | Phenylpropanoid | POD | low | borderline | POD__00018__sp_Q8H0V5_OCP3_ARATH |
| At.02g138030-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| At.02g138040-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| At.02g145570-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| At.02g148100-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| At.02g148380-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| At.02g148660-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| At.02g149050-v1.1.a1 | Phenylpropanoid | POD | low | borderline | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| At.02g149800-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| At.02g153500-v1.1.a1 | Phenylpropanoid | POD | low | borderline | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| At.02g155870-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| At.03g080380-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| At.03g080420-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| At.03g080440-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| At.03g080470-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| At.03g080480-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| At.03g080490-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| At.03g080500-v1.1.a1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |