PlantSME Plant secondary metabolism enzyme database

Amaranthus tuberculatus (amaranthus_tuberculatus)

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Imported from atlas release summary for Amaranthus tuberculatus.

1072
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 291 19 UGT (103) View species results
Phenylpropanoid pathway 261 11 POD (140) View species results
Alkaloid pathway 222 20 7DLGT (50) View species results
Flavonoid pathway 144 12 UFGT (92) View species results
Rosmarinic acid pathway 111 7 C4H (45) View species results
Steroid pathway 43 10 CAS (17) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 966 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 181 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
At.01g021490-v1.1.a1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
At.01g022090-v1.1.a1 Phenylpropanoid CAD medium pass CAD__00014__sp_Q2KNL5_CADH1_OCIBA
At.01g051820-v1.1.a1 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
At.02g145600-v1.1.a1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
At.02g145610-v1.1.a1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
At.02g154130-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
At.03g165860-v1.1.a1 Phenylpropanoid CAD medium pass CAD__00012__sp_Q02972_CADH8_ARATH
At.03g165870-v1.1.a1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
At.03g166670-v1.1.a1 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
At.04g184400-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
At.04g192350-v1.1.a1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
At.04g192360-v1.1.a1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
At.04g193800-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
At.05g109160-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
At.05g198060-v1.1.a1 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
At.05g199740-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
At.05g199800-v1.1.a1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
At.06g221530-v1.1.a1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
At.06g222380-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
At.06g233150-v1.1.a1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
At.06g233160-v1.1.a1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
At.06g233170-v1.1.a1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
At.06g234740-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
At.06g234750-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
At.08g251660-v1.1.a1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
At.08g255890-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
At.08g257040-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
At.09g281320-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
At.09g282100-v1.1.a1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
At.09g282110-v1.1.a1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR