Amaranthus tuberculatus (amaranthus_tuberculatus)
/
Imported from atlas release summary for Amaranthus tuberculatus.
1072
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1072
Candidate Genes
C4H
6.62%
POD
5.98%
C3'H/CYP98A
5.94%
BAHD
5.25%
UGT
4.61%
4CL
4.21%
7DLGT
4.01%
UFGT
3.97%
Other Families
59.41%
More Families (95)
CYP76
98
3.93%
NMT
85
3.41%
T3O
82
3.29%
IFS
78
3.13%
BR6OX2/CYP85A2
56
2.25%
DWF4/CYP90B1
54
2.17%
F3'H/CYP75B
50
2.01%
F3H
42
1.68%
CYP71
36
1.44%
TRI/TRII
35
1.4%
CODM/T6ODM
30
1.2%
CAD
30
1.2%
PYKS
29
1.16%
STR
29
1.16%
RAS
27
1.08%
G8O/G8H
25
1.0%
CSE
25
1.0%
LAC
24
0.96%
SMT1/SMT2/SMT3
24
0.96%
T16H
23
0.92%
IFR
23
0.92%
F3'5'H/CYP75A
23
0.92%
HCT
23
0.92%
COMT
23
0.92%
CAS
23
0.92%
GS
19
0.76%
CYP90D1
18
0.72%
FNS
17
0.68%
BR6OX1/CYP85A1
17
0.68%
H6H
16
0.64%
PMT
16
0.64%
SLS
16
0.64%
BBE
16
0.64%
7DLH
16
0.64%
16OMT
15
0.6%
F5H/CYP84A
15
0.6%
TPS
15
0.6%
IO
13
0.52%
ANR
13
0.52%
GES
12
0.48%
SGD
12
0.48%
CYP51G1
12
0.48%
CCR
11
0.44%
CPR
11
0.44%
TAT
10
0.4%
CPD/CYP90A1
10
0.4%
FPPS
10
0.4%
8HGO
8
0.32%
NCS
8
0.32%
TDC
7
0.28%
COR
7
0.28%
DFR
7
0.28%
ANS/LDOX
7
0.28%
AACT
7
0.28%
TYDC_DDC
6
0.24%
MPO
6
0.24%
PAL
6
0.24%
CCoAOMT
6
0.24%
HPPR
6
0.24%
GGPPS
6
0.24%
CYP719
5
0.2%
ISY
5
0.2%
SQS/FDFT1
5
0.2%
XMT_MXMT_DXMT
4
0.16%
CHS
4
0.16%
DET2
4
0.16%
HMGR
4
0.16%
DXR
4
0.16%
MVD
4
0.16%
CNMT
3
0.12%
ROT3/CYP90C1
3
0.12%
SQE
3
0.12%
MVK
3
0.12%
MDS/IspF
3
0.12%
HMGS
3
0.12%
DXS
3
0.12%
CYP80B1
2
0.08%
LAMT
2
0.08%
CHI
2
0.08%
FLS
2
0.08%
HYD1
2
0.08%
FK
2
0.08%
MCT/IspD
2
0.08%
IDI
2
0.08%
ADC
1
0.04%
CYP80F1
1
0.04%
DWF1
1
0.04%
CPI1
1
0.04%
DWF5
1
0.04%
SMO1/SMO2
1
0.04%
DWF7
1
0.04%
HDS/IspG
1
0.04%
HDR/IspH
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 291 | 19 | UGT (103) | View species results |
| Phenylpropanoid pathway | 261 | 11 | POD (140) | View species results |
| Alkaloid pathway | 222 | 20 | 7DLGT (50) | View species results |
| Flavonoid pathway | 144 | 12 | UFGT (92) | View species results |
| Rosmarinic acid pathway | 111 | 7 | C4H (45) | View species results |
| Steroid pathway | 43 | 10 | CAS (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 966 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 181 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| At.03g089050-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00050__sp_O22822_U74F2_ARATH |
| At.03g092760-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| At.03g092770-v1.1.a1 | Terpenoid | UGT | low | borderline | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| At.03g092780-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00001__sp_A0A067YB04_UGT1_PUEML |
| At.03g094140-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| At.03g094150-v1.1.a1 | Terpenoid | UGT | low | borderline | UGT__00021__sp_A7MAS5_75L17_MALDO |
| At.03g156400-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00009__sp_A0A0G4DBR5_FG3N_SOYBN |
| At.03g156600-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00055__sp_O48676_U74B1_ARATH |
| At.03g156620-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00037__sp_I1LCI8_FG2KO_SOYBN |
| At.03g162220-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00102__sp_Q9LZD8_U89A2_ARATH |
| At.03g164160-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| At.03g164170-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00101__sp_Q9LVR1_U72E2_ARATH |
| At.03g164910-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| At.03g164920-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| At.03g164950-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| At.03g166080-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| At.03g167320-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00077__sp_Q8VZE9_U73B1_ARATH |
| At.03g169130-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00009__sp_A0A0G4DBR5_FG3N_SOYBN |
| At.03g170240-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| At.03g170250-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| At.03g172770-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00048__sp_O22182_U84B1_ARATH |
| At.04g097570-v1.1.a1 | Terpenoid | UGT | low | borderline | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| At.04g106660-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| At.04g107550-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00035__sp_I1KEV6_FG3H_SOYBN |
| At.04g179380-v1.1.a1 | Terpenoid | UGT | low | borderline | UGT__00045__sp_K4GKX2_73C10_BARVU |
| At.04g179390-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00045__sp_K4GKX2_73C10_BARVU |
| At.04g183190-v1.1.a1 | Terpenoid | UGT | low | borderline | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| At.04g183840-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| At.04g185090-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| At.04g186970-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| At.04g186980-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| At.04g195480-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00035__sp_I1KEV6_FG3H_SOYBN |
| At.05g111480-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00037__sp_I1LCI8_FG2KO_SOYBN |
| At.05g111520-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| At.05g111530-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00034__sp_F8WLS6_UGT6_CATRO |
| At.05g114710-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| At.05g114730-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00106__sp_Q9SKC5_U74D1_ARATH |
| At.05g114740-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| At.05g115240-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00050__sp_O22822_U74F2_ARATH |
| At.05g115250-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| At.05g115270-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00050__sp_O22822_U74F2_ARATH |
| At.05g115280-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| At.05g119110-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| At.05g202190-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00034__sp_F8WLS6_UGT6_CATRO |
| At.05g215270-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| At.05g215300-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| At.05g215310-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00092__sp_Q9LNI1_U72B3_ARATH |
| At.06g121940-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| At.06g122910-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| At.06g122920-v1.1.a1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |