Amaranthus tuberculatus (amaranthus_tuberculatus)
/
Imported from atlas release summary for Amaranthus tuberculatus.
1072
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1072
Candidate Genes
C4H
6.62%
POD
5.98%
C3'H/CYP98A
5.94%
BAHD
5.25%
UGT
4.61%
4CL
4.21%
7DLGT
4.01%
UFGT
3.97%
Other Families
59.41%
More Families (95)
CYP76
98
3.93%
NMT
85
3.41%
T3O
82
3.29%
IFS
78
3.13%
BR6OX2/CYP85A2
56
2.25%
DWF4/CYP90B1
54
2.17%
F3'H/CYP75B
50
2.01%
F3H
42
1.68%
CYP71
36
1.44%
TRI/TRII
35
1.4%
CODM/T6ODM
30
1.2%
CAD
30
1.2%
PYKS
29
1.16%
STR
29
1.16%
RAS
27
1.08%
G8O/G8H
25
1.0%
CSE
25
1.0%
LAC
24
0.96%
SMT1/SMT2/SMT3
24
0.96%
T16H
23
0.92%
IFR
23
0.92%
F3'5'H/CYP75A
23
0.92%
HCT
23
0.92%
COMT
23
0.92%
CAS
23
0.92%
GS
19
0.76%
CYP90D1
18
0.72%
FNS
17
0.68%
BR6OX1/CYP85A1
17
0.68%
H6H
16
0.64%
PMT
16
0.64%
SLS
16
0.64%
BBE
16
0.64%
7DLH
16
0.64%
16OMT
15
0.6%
F5H/CYP84A
15
0.6%
TPS
15
0.6%
IO
13
0.52%
ANR
13
0.52%
GES
12
0.48%
SGD
12
0.48%
CYP51G1
12
0.48%
CCR
11
0.44%
CPR
11
0.44%
TAT
10
0.4%
CPD/CYP90A1
10
0.4%
FPPS
10
0.4%
8HGO
8
0.32%
NCS
8
0.32%
TDC
7
0.28%
COR
7
0.28%
DFR
7
0.28%
ANS/LDOX
7
0.28%
AACT
7
0.28%
TYDC_DDC
6
0.24%
MPO
6
0.24%
PAL
6
0.24%
CCoAOMT
6
0.24%
HPPR
6
0.24%
GGPPS
6
0.24%
CYP719
5
0.2%
ISY
5
0.2%
SQS/FDFT1
5
0.2%
XMT_MXMT_DXMT
4
0.16%
CHS
4
0.16%
DET2
4
0.16%
HMGR
4
0.16%
DXR
4
0.16%
MVD
4
0.16%
CNMT
3
0.12%
ROT3/CYP90C1
3
0.12%
SQE
3
0.12%
MVK
3
0.12%
MDS/IspF
3
0.12%
HMGS
3
0.12%
DXS
3
0.12%
CYP80B1
2
0.08%
LAMT
2
0.08%
CHI
2
0.08%
FLS
2
0.08%
HYD1
2
0.08%
FK
2
0.08%
MCT/IspD
2
0.08%
IDI
2
0.08%
ADC
1
0.04%
CYP80F1
1
0.04%
DWF1
1
0.04%
CPI1
1
0.04%
DWF5
1
0.04%
SMO1/SMO2
1
0.04%
DWF7
1
0.04%
HDS/IspG
1
0.04%
HDR/IspH
1
0.04%
PMK
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 291 | 19 | UGT (103) | View species results |
| Phenylpropanoid pathway | 261 | 11 | POD (140) | View species results |
| Alkaloid pathway | 222 | 20 | 7DLGT (50) | View species results |
| Flavonoid pathway | 144 | 12 | UFGT (92) | View species results |
| Rosmarinic acid pathway | 111 | 7 | C4H (45) | View species results |
| Steroid pathway | 43 | 10 | CAS (17) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 966 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 181 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| At.03g165600-v1.1.a1 | Terpenoid | HMGR | low | borderline |
| At.03g165610-v1.1.a1 | Terpenoid | HMGR | medium | pass |
| At.02g068990-v1.1.a1 | Terpenoid | HMGS | high | pass |
| At.02g137740-v1.1.a1 | Terpenoid | HMGS | high | pass |
| At.02g147110-v1.1.a1 | Terpenoid | HMGS | low | borderline |
| At.04g188890-v1.1.a1 | Terpenoid | IDI | medium | pass |
| At.06g234590-v1.1.a1 | Terpenoid | IDI | medium | pass |
| At.02g152450-v1.1.a1 | Terpenoid | MCT/IspD | high | pass |
| At.06g233980-v1.1.a1 | Terpenoid | MCT/IspD | low | borderline |
| At.02g062900-v1.1.a1 | Terpenoid | MDS/IspF | high | pass |
| At.07g236200-v1.1.a1 | Terpenoid | MDS/IspF | medium | pass |
| At.07g236220-v1.1.a1 | Terpenoid | MDS/IspF | high | pass |
| At.02g138830-v1.1.a1 | Terpenoid | MVD | medium | pass |
| At.02g148010-v1.1.a1 | Terpenoid | MVD | low | borderline |
| At.04g103630-v1.1.a1 | Terpenoid | MVD | low | borderline |
| At.04g190440-v1.1.a1 | Terpenoid | MVD | low | borderline |
| At.01g011490-v1.1.a1 | Terpenoid | MVK | low | borderline |
| At.06g228170-v1.1.a1 | Terpenoid | MVK | medium | pass |
| At.07g241080-v1.1.a1 | Terpenoid | MVK | low | borderline |
| At.02g066830-v1.1.a1 | Terpenoid | PMK | low | borderline |
| At.01g021510-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.01g025460-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.03g084160-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.04g196280-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.06g219920-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.06g219930-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.06g220210-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.06g220250-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.06g222380-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.06g225840-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.06g234740-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.06g234750-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.08g259940-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.08g261520-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.09g282100-v1.1.a1 | Terpenoid | TPS | medium | pass |
| At.00g042100-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.00g043940-v1.1.a1 | Terpenoid | UGT | low | borderline |
| At.01g000440-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g000450-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g000560-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g012210-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g012220-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g015030-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g021050-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g021610-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g021620-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g021690-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g021700-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g021710-v1.1.a1 | Terpenoid | UGT | medium | pass |
| At.01g022110-v1.1.a1 | Terpenoid | UGT | medium | pass |