Angelica sinensis (angelica_sinensis)
Imported from atlas release summary for Angelica sinensis.
1613
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1613
Candidate Genes
C4H
6.68%
C3'H/CYP98A
6.28%
BAHD
5.26%
UGT
4.26%
IFS
3.84%
CYP76
3.84%
7DLGT
3.65%
4CL
3.56%
Other Families
62.63%
More Families (97)
T3O
145
3.37%
POD
142
3.3%
UFGT
140
3.26%
F3H
122
2.84%
F3'H/CYP75B
116
2.7%
DWF4/CYP90B1
108
2.51%
BR6OX2/CYP85A2
97
2.26%
NMT
93
2.16%
CODM/T6ODM
79
1.84%
STR
71
1.65%
BBE
71
1.65%
CYP71
70
1.63%
SMT1/SMT2/SMT3
60
1.4%
H6H
54
1.26%
CAD
54
1.26%
T16H
49
1.14%
CSE
47
1.09%
CAS
46
1.07%
7DLH
44
1.02%
G8O/G8H
44
1.02%
TRI/TRII
40
0.93%
IFR
38
0.88%
TPS
37
0.86%
HCT
36
0.84%
LAC
35
0.81%
PYKS
33
0.77%
TAT
32
0.74%
CYP90D1
32
0.74%
GES
31
0.72%
F3'5'H/CYP75A
31
0.72%
F5H/CYP84A
31
0.72%
GS
30
0.7%
IO
30
0.7%
SLS
28
0.65%
FNS
27
0.63%
RAS
27
0.63%
PMT
26
0.6%
COMT
26
0.6%
CPD/CYP90A1
26
0.6%
COR
24
0.56%
NCS
21
0.49%
ANR
20
0.47%
CCR
19
0.44%
CYP51G1
17
0.4%
BR6OX1/CYP85A1
17
0.4%
SGD
16
0.37%
LAMT
16
0.37%
8HGO
14
0.33%
ISY
14
0.33%
16OMT
13
0.3%
ANS/LDOX
13
0.3%
DFR
13
0.3%
ROT3/CYP90C1
13
0.3%
CYP719
12
0.28%
MPO
12
0.28%
PAL
12
0.28%
FPPS
12
0.28%
CHS
11
0.26%
CNMT
9
0.21%
CPR
9
0.21%
TYDC_DDC
8
0.19%
GGPPS
8
0.19%
SQE
7
0.16%
SQS/FDFT1
7
0.16%
CPI1
7
0.16%
CYP80B1
6
0.14%
CCoAOMT
6
0.14%
XMT_MXMT_DXMT
5
0.12%
FLS
5
0.12%
HPPR
5
0.12%
MVK
5
0.12%
HMGS
5
0.12%
DXS
5
0.12%
HDR/IspH
5
0.12%
DET2
4
0.09%
DWF1
4
0.09%
AACT
4
0.09%
MVD
4
0.09%
PMK
4
0.09%
CHI
3
0.07%
HYD1
3
0.07%
HMGR
3
0.07%
MCT/IspD
3
0.07%
6OMT_4OMT_SOMT
2
0.05%
TDC
2
0.05%
ADC
2
0.05%
SMO1/SMO2
2
0.05%
FK
2
0.05%
CMK/IspE
2
0.05%
HDS/IspG
2
0.05%
CYP80F1
1
0.02%
ODC
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
MDS/IspF
1
0.02%
IDI
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 478 | 19 | BAHD (172) | View species results |
| Alkaloid pathway | 405 | 24 | 7DLGT (76) | View species results |
| Phenylpropanoid pathway | 298 | 11 | POD (134) | View species results |
| Flavonoid pathway | 203 | 9 | UFGT (123) | View species results |
| Rosmarinic acid pathway | 124 | 7 | C4H (47) | View species results |
| Steroid pathway | 105 | 11 | CAS (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1804 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 289 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| angelica_sinensis_AS01G00614-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS01G01326-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS01G01329-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS01G03227-RA | Alkaloid | PMT | medium | borderline |
| angelica_sinensis_AS02G01453-RA | Alkaloid | PMT | medium | pass |
| angelica_sinensis_AS02G03541-RA | Alkaloid | PMT | medium | pass |
| angelica_sinensis_AS03G00090-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS03G02131-RA | Alkaloid | PMT | medium | pass |
| angelica_sinensis_AS04G00249-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS05G00014-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS05G00200-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS05G03053-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS05G03568-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS06G00669-RA | Alkaloid | PMT | medium | borderline |
| angelica_sinensis_AS06G02176-RA | Alkaloid | PMT | medium | pass |
| angelica_sinensis_AS07G02808-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS08G03385-RA | Alkaloid | PMT | medium | pass |
| angelica_sinensis_AS10G01022-RA | Alkaloid | PMT | medium | borderline |
| angelica_sinensis_AS10G01653-RA | Alkaloid | PMT | medium | pass |
| angelica_sinensis_AS10G01655-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS10G01657-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS10G01658-RA | Alkaloid | PMT | medium | pass |
| angelica_sinensis_AS10G02775-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_AS11G01965-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_ASUnG00053-RA | Alkaloid | PMT | low | borderline |
| angelica_sinensis_ASUnG00391-RA | Alkaloid | PMT | medium | pass |