PlantSME Plant secondary metabolism enzyme database

Angelica sinensis (angelica_sinensis)

Imported from atlas release summary for Angelica sinensis.

1613
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.63% Alkaloid pathway 25.11% Phenylpropanoid pathway 18.47% Flavonoid pathway 12.59% Rosmarinic acid pathway 7.69% Steroid pathway 6.51%
Family Distribution
C4H 6.68% C3'H/CYP98A 6.28% BAHD 5.26% UGT 4.26% IFS 3.84% CYP76 3.84% 7DLGT 3.65% 4CL 3.56%
Other Families 62.63%
More Families (97)
T3O 145 3.37% POD 142 3.3% UFGT 140 3.26% F3H 122 2.84% F3'H/CYP75B 116 2.7% DWF4/CYP90B1 108 2.51% BR6OX2/CYP85A2 97 2.26% NMT 93 2.16% CODM/T6ODM 79 1.84% STR 71 1.65% BBE 71 1.65% CYP71 70 1.63% SMT1/SMT2/SMT3 60 1.4% H6H 54 1.26% CAD 54 1.26% T16H 49 1.14% CSE 47 1.09% CAS 46 1.07% 7DLH 44 1.02% G8O/G8H 44 1.02% TRI/TRII 40 0.93% IFR 38 0.88% TPS 37 0.86% HCT 36 0.84% LAC 35 0.81% PYKS 33 0.77% TAT 32 0.74% CYP90D1 32 0.74% GES 31 0.72% F3'5'H/CYP75A 31 0.72% F5H/CYP84A 31 0.72% GS 30 0.7% IO 30 0.7% SLS 28 0.65% FNS 27 0.63% RAS 27 0.63% PMT 26 0.6% COMT 26 0.6% CPD/CYP90A1 26 0.6% COR 24 0.56% NCS 21 0.49% ANR 20 0.47% CCR 19 0.44% CYP51G1 17 0.4% BR6OX1/CYP85A1 17 0.4% SGD 16 0.37% LAMT 16 0.37% 8HGO 14 0.33% ISY 14 0.33% 16OMT 13 0.3% ANS/LDOX 13 0.3% DFR 13 0.3% ROT3/CYP90C1 13 0.3% CYP719 12 0.28% MPO 12 0.28% PAL 12 0.28% FPPS 12 0.28% CHS 11 0.26% CNMT 9 0.21% CPR 9 0.21% TYDC_DDC 8 0.19% GGPPS 8 0.19% SQE 7 0.16% SQS/FDFT1 7 0.16% CPI1 7 0.16% CYP80B1 6 0.14% CCoAOMT 6 0.14% XMT_MXMT_DXMT 5 0.12% FLS 5 0.12% HPPR 5 0.12% MVK 5 0.12% HMGS 5 0.12% DXS 5 0.12% HDR/IspH 5 0.12% DET2 4 0.09% DWF1 4 0.09% AACT 4 0.09% MVD 4 0.09% PMK 4 0.09% CHI 3 0.07% HYD1 3 0.07% HMGR 3 0.07% MCT/IspD 3 0.07% 6OMT_4OMT_SOMT 2 0.05% TDC 2 0.05% ADC 2 0.05% SMO1/SMO2 2 0.05% FK 2 0.05% CMK/IspE 2 0.05% HDS/IspG 2 0.05% CYP80F1 1 0.02% ODC 1 0.02% DWF7 1 0.02% DWF5 1 0.02% MDS/IspF 1 0.02% IDI 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 478 19 BAHD (172) View species results
Alkaloid pathway 405 24 7DLGT (76) View species results
Phenylpropanoid pathway 298 11 POD (134) View species results
Flavonoid pathway 203 9 UFGT (123) View species results
Rosmarinic acid pathway 124 7 C4H (47) View species results
Steroid pathway 105 11 CAS (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1804 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 289 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMO1/SMO2
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Gene Pathway Family Confidence Status Best Target
angelica_sinensis_AS02G00964-RA Steroid SMO1/SMO2 medium pass SMO1_SMO2__00003__sp_Q8VWZ8_SMO22_ARATH
angelica_sinensis_AS08G00719-RA Steroid SMO1/SMO2 medium pass SMO1_SMO2__00002__sp_Q8L7W5_SMO11_ARATH