Arabidopsis arenosa (arabidopsis_arenosa)
/
Imported from atlas release summary for Arabidopsis arenosa.
1065
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1065
Candidate Genes
BAHD
6.12%
C4H
5.52%
POD
5.37%
C3'H/CYP98A
5.3%
4CL
4.77%
CYP76
3.57%
UGT
3.39%
7DLGT
3.08%
Other Families
62.87%
More Families (96)
NMT
83
2.93%
F3H
83
2.93%
UFGT
81
2.86%
DWF4/CYP90B1
68
2.4%
IFS
67
2.37%
F3'H/CYP75B
59
2.09%
STR
56
1.98%
T3O
55
1.94%
SGD
54
1.91%
BR6OX2/CYP85A2
51
1.8%
SMT1/SMT2/SMT3
50
1.77%
CODM/T6ODM
48
1.7%
H6H
44
1.56%
CAS
43
1.52%
CSE
41
1.45%
TRI/TRII
39
1.38%
IFR
37
1.31%
CAD
36
1.27%
TPS
31
1.1%
FNS
30
1.06%
GES
29
1.03%
G8O/G8H
28
0.99%
SLS
28
0.99%
PYKS
27
0.95%
HCT
27
0.95%
LAC
27
0.95%
BBE
26
0.92%
COMT
22
0.78%
CYP71
22
0.78%
GS
21
0.74%
T16H
20
0.71%
TAT
19
0.67%
IO
18
0.64%
RAS
18
0.64%
LAMT
17
0.6%
ANR
17
0.6%
CCR
17
0.6%
16OMT
16
0.57%
F3'5'H/CYP75A
16
0.57%
F5H/CYP84A
14
0.5%
FPPS
14
0.5%
7DLH
13
0.46%
ANS/LDOX
13
0.46%
PAL
12
0.42%
CYP90D1
12
0.42%
GGPPS
12
0.42%
NCS
11
0.39%
BR6OX1/CYP85A1
11
0.39%
DFR
10
0.35%
CPD/CYP90A1
10
0.35%
CYP719
9
0.32%
8HGO
9
0.32%
PMT
8
0.28%
MPO
8
0.28%
ROT3/CYP90C1
8
0.28%
SQE
8
0.28%
AACT
8
0.28%
CYP80B1
7
0.25%
COR
7
0.25%
CCoAOMT
7
0.25%
CPR
7
0.25%
CYP51G1
7
0.25%
CYP80F1
5
0.18%
CHS
5
0.18%
SMO1/SMO2
5
0.18%
SQS/FDFT1
5
0.18%
MVK
5
0.18%
CNMT
4
0.14%
CHI
4
0.14%
DXS
4
0.14%
TDC
3
0.11%
HPPR
3
0.11%
DET2
3
0.11%
MVD
3
0.11%
MCT/IspD
3
0.11%
CMK/IspE
3
0.11%
ADC
2
0.07%
TYDC_DDC
2
0.07%
ISY
2
0.07%
DWF1
2
0.07%
CPI1
2
0.07%
HMGR
2
0.07%
IDI
2
0.07%
6OMT_4OMT_SOMT
1
0.04%
XMT_MXMT_DXMT
1
0.04%
FLS
1
0.04%
HYD1
1
0.04%
DWF5
1
0.04%
DWF7
1
0.04%
FK
1
0.04%
PMK
1
0.04%
MDS/IspF
1
0.04%
HMGS
1
0.04%
HDR/IspH
1
0.04%
HDS/IspG
1
0.04%
DXR
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 301 | 20 | BAHD (125) | View species results |
| Phenylpropanoid pathway | 249 | 12 | POD (118) | View species results |
| Alkaloid pathway | 247 | 18 | NMT (48) | View species results |
| Flavonoid pathway | 123 | 9 | UFGT (71) | View species results |
| Steroid pathway | 77 | 11 | CAS (32) | View species results |
| Rosmarinic acid pathway | 68 | 7 | 4CL (25) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 935 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 218 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| arabidopsis_arenosa_CAE5957617.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00008__sp_Q9S9N9_CCR1_ARATH |
| arabidopsis_arenosa_CAE5958556.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| arabidopsis_arenosa_CAE5959546.1 | Phenylpropanoid | CCR | low | borderline | CCR__00006__sp_Q6K9A2_CCR1_ORYSJ |
| arabidopsis_arenosa_CAE5959548.1 | Phenylpropanoid | CCR | low | borderline | CCR__00006__sp_Q6K9A2_CCR1_ORYSJ |
| arabidopsis_arenosa_CAE5963437.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| arabidopsis_arenosa_CAE5964344.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| arabidopsis_arenosa_CAE5964748.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00009__sp_Q9SAH9_CCR2_ARATH |
| arabidopsis_arenosa_CAE6005168.1 | Phenylpropanoid | CCR | medium | pass | CCR__00002__sp_A0A072VDF2_CCR1_MEDTR |
| arabidopsis_arenosa_CAE6011297.1 | Phenylpropanoid | CCR | low | borderline | CCR__00006__sp_Q6K9A2_CCR1_ORYSJ |
| arabidopsis_arenosa_CAE6027522.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| arabidopsis_arenosa_CAE6047166.1 | Phenylpropanoid | CCR | low | borderline | CCR__00006__sp_Q6K9A2_CCR1_ORYSJ |
| arabidopsis_arenosa_CAE6051392.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00002__sp_A0A072VDF2_CCR1_MEDTR |
| arabidopsis_arenosa_CAE6063847.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00002__sp_A0A072VDF2_CCR1_MEDTR |
| arabidopsis_arenosa_CAE6101703.1 | Phenylpropanoid | CCR | medium | pass | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |
| arabidopsis_arenosa_CAE6108896.1 | Phenylpropanoid | CCR | low | borderline | CCR__00006__sp_Q6K9A2_CCR1_ORYSJ |
| arabidopsis_arenosa_CAE6224426.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| arabidopsis_arenosa_CAE6247673.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |