PlantSME Plant secondary metabolism enzyme database

Arabidopsis arenosa (arabidopsis_arenosa)

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Imported from atlas release summary for Arabidopsis arenosa.

1065
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.26% Phenylpropanoid pathway 23.38% Alkaloid pathway 23.19% Flavonoid pathway 11.55% Steroid pathway 7.23% Rosmarinic acid pathway 6.38%
Family Distribution
BAHD 6.12% C4H 5.52% POD 5.37% C3'H/CYP98A 5.3% 4CL 4.77% CYP76 3.57% UGT 3.39% 7DLGT 3.08%
Other Families 62.87%
More Families (96)
NMT 83 2.93% F3H 83 2.93% UFGT 81 2.86% DWF4/CYP90B1 68 2.4% IFS 67 2.37% F3'H/CYP75B 59 2.09% STR 56 1.98% T3O 55 1.94% SGD 54 1.91% BR6OX2/CYP85A2 51 1.8% SMT1/SMT2/SMT3 50 1.77% CODM/T6ODM 48 1.7% H6H 44 1.56% CAS 43 1.52% CSE 41 1.45% TRI/TRII 39 1.38% IFR 37 1.31% CAD 36 1.27% TPS 31 1.1% FNS 30 1.06% GES 29 1.03% G8O/G8H 28 0.99% SLS 28 0.99% PYKS 27 0.95% HCT 27 0.95% LAC 27 0.95% BBE 26 0.92% COMT 22 0.78% CYP71 22 0.78% GS 21 0.74% T16H 20 0.71% TAT 19 0.67% IO 18 0.64% RAS 18 0.64% LAMT 17 0.6% ANR 17 0.6% CCR 17 0.6% 16OMT 16 0.57% F3'5'H/CYP75A 16 0.57% F5H/CYP84A 14 0.5% FPPS 14 0.5% 7DLH 13 0.46% ANS/LDOX 13 0.46% PAL 12 0.42% CYP90D1 12 0.42% GGPPS 12 0.42% NCS 11 0.39% BR6OX1/CYP85A1 11 0.39% DFR 10 0.35% CPD/CYP90A1 10 0.35% CYP719 9 0.32% 8HGO 9 0.32% PMT 8 0.28% MPO 8 0.28% ROT3/CYP90C1 8 0.28% SQE 8 0.28% AACT 8 0.28% CYP80B1 7 0.25% COR 7 0.25% CCoAOMT 7 0.25% CPR 7 0.25% CYP51G1 7 0.25% CYP80F1 5 0.18% CHS 5 0.18% SMO1/SMO2 5 0.18% SQS/FDFT1 5 0.18% MVK 5 0.18% CNMT 4 0.14% CHI 4 0.14% DXS 4 0.14% TDC 3 0.11% HPPR 3 0.11% DET2 3 0.11% MVD 3 0.11% MCT/IspD 3 0.11% CMK/IspE 3 0.11% ADC 2 0.07% TYDC_DDC 2 0.07% ISY 2 0.07% DWF1 2 0.07% CPI1 2 0.07% HMGR 2 0.07% IDI 2 0.07% 6OMT_4OMT_SOMT 1 0.04% XMT_MXMT_DXMT 1 0.04% FLS 1 0.04% HYD1 1 0.04% DWF5 1 0.04% DWF7 1 0.04% FK 1 0.04% PMK 1 0.04% MDS/IspF 1 0.04% HMGS 1 0.04% HDR/IspH 1 0.04% HDS/IspG 1 0.04% DXR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 301 20 BAHD (125) View species results
Phenylpropanoid pathway 249 12 POD (118) View species results
Alkaloid pathway 247 18 NMT (48) View species results
Flavonoid pathway 123 9 UFGT (71) View species results
Steroid pathway 77 11 CAS (32) View species results
Rosmarinic acid pathway 68 7 4CL (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 935 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 218 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
arabidopsis_arenosa_CAE5966756.1 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
arabidopsis_arenosa_CAE6034142.1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
arabidopsis_arenosa_CAE6076097.1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
arabidopsis_arenosa_CAE6086271.1 Flavonoid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
arabidopsis_arenosa_CAE5966756.1 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
arabidopsis_arenosa_CAE6034142.1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
arabidopsis_arenosa_CAE6076097.1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
arabidopsis_arenosa_CAE6086271.1 Phenylpropanoid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
arabidopsis_arenosa_CAE5966756.1 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
arabidopsis_arenosa_CAE6034142.1 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
arabidopsis_arenosa_CAE6076097.1 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
arabidopsis_arenosa_CAE6086271.1 Rosmarinic Acid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH