PlantSME Plant secondary metabolism enzyme database

Arabidopsis lyrata (arabidopsis_lyrata)

Imported from atlas release summary for Arabidopsis lyrata.

1440
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 442 19 BAHD (179) View species results
Alkaloid pathway 314 20 7DLGT (56) View species results
Phenylpropanoid pathway 303 12 POD (140) View species results
Flavonoid pathway 172 10 UFGT (118) View species results
Rosmarinic acid pathway 108 7 C4H (44) View species results
Steroid pathway 101 12 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1376 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 265 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Alyrscaffold_10001250.1 Alkaloid IO medium borderline
Alyrscaffold_10012190.1 Alkaloid IO medium borderline
Alyrscaffold_10017690.1 Alkaloid IO medium borderline
Alyrscaffold_10017710.1 Alkaloid IO medium borderline
Alyrscaffold_1650053350.1 Alkaloid IO medium borderline
Alyrscaffold_20073940.1 Alkaloid IO medium borderline
Alyrscaffold_220082570.1 Alkaloid IO medium pass
Alyrscaffold_30095110.1 Alkaloid IO medium borderline
Alyrscaffold_30106380.1 Alkaloid IO medium borderline
Alyrscaffold_30106440.1 Alkaloid IO medium borderline
Alyrscaffold_30112960.1 Alkaloid IO medium borderline
Alyrscaffold_40127110.1 Alkaloid IO medium pass
Alyrscaffold_40128200.1 Alkaloid IO medium borderline
Alyrscaffold_40128210.1 Alkaloid IO medium borderline
Alyrscaffold_40131030.1 Alkaloid IO medium borderline
Alyrscaffold_40132740.1 Alkaloid IO medium borderline
Alyrscaffold_50162670.1 Alkaloid IO medium borderline
Alyrscaffold_50181540.1 Alkaloid IO medium borderline
Alyrscaffold_60197980.1 Alkaloid IO medium borderline
Alyrscaffold_60198790.1 Alkaloid IO high pass
Alyrscaffold_60200640.1 Alkaloid IO medium borderline
Alyrscaffold_70237060.1 Alkaloid IO medium pass
Alyrscaffold_70238250.1 Alkaloid IO medium borderline
Alyrscaffold_70238320.1 Alkaloid IO medium borderline
Alyrscaffold_70254860.1 Alkaloid IO medium borderline
Alyrscaffold_70263510.1 Alkaloid IO low borderline
Alyrscaffold_70267690.1 Alkaloid IO medium borderline
Alyrscaffold_80283010.1 Alkaloid IO low borderline
Alyrscaffold_860308220.1 Alkaloid IO medium borderline