Arabidopsis lyrata (arabidopsis_lyrata)
Imported from atlas release summary for Arabidopsis lyrata.
1440
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1440
Candidate Genes
C4H
6.2%
BAHD
6.17%
C3'H/CYP98A
6.12%
POD
4.32%
CYP76
4.12%
UGT
3.97%
IFS
3.89%
UFGT
3.63%
Other Families
61.58%
More Families (94)
7DLGT
121
3.46%
T3O
118
3.37%
4CL
114
3.26%
NMT
101
2.89%
DWF4/CYP90B1
93
2.66%
BR6OX2/CYP85A2
85
2.43%
F3H
81
2.32%
F3'H/CYP75B
63
1.8%
SMT1/SMT2/SMT3
59
1.69%
CYP71
56
1.6%
SGD
55
1.57%
STR
55
1.57%
CODM/T6ODM
50
1.43%
CAS
48
1.37%
CSE
47
1.34%
TRI/TRII
45
1.29%
H6H
39
1.11%
CAD
34
0.97%
T16H
32
0.91%
SLS
32
0.91%
IFR
32
0.91%
BBE
31
0.89%
IO
29
0.83%
TPS
29
0.83%
PYKS
28
0.8%
FNS
26
0.74%
HCT
26
0.74%
LAC
26
0.74%
GES
25
0.71%
ANR
24
0.69%
F5H/CYP84A
24
0.69%
TAT
24
0.69%
RAS
23
0.66%
COMT
22
0.63%
G8O/G8H
21
0.6%
CYP90D1
21
0.6%
GS
20
0.57%
CCR
20
0.57%
NCS
17
0.49%
LAMT
17
0.49%
F3'5'H/CYP75A
17
0.49%
BR6OX1/CYP85A1
17
0.49%
8HGO
15
0.43%
PAL
15
0.43%
16OMT
14
0.4%
CPD/CYP90A1
14
0.4%
ANS/LDOX
13
0.37%
CPR
13
0.37%
GGPPS
13
0.37%
FPPS
13
0.37%
CNMT
12
0.34%
SQE
11
0.31%
7DLH
10
0.29%
COR
10
0.29%
CYP51G1
10
0.29%
PMT
8
0.23%
TYDC_DDC
8
0.23%
CYP719
8
0.23%
DFR
8
0.23%
AACT
8
0.23%
CCoAOMT
7
0.2%
ROT3/CYP90C1
6
0.17%
MVD
6
0.17%
CYP80B1
5
0.14%
CHI
5
0.14%
SMO1/SMO2
5
0.14%
SQS/FDFT1
5
0.14%
CYP80F1
4
0.11%
CHS
4
0.11%
FLS
4
0.11%
DWF7
4
0.11%
HMGR
4
0.11%
IDI
4
0.11%
DXS
4
0.11%
MPO
3
0.09%
ISY
3
0.09%
HPPR
3
0.09%
DET2
3
0.09%
MCT/IspD
3
0.09%
MVK
3
0.09%
CMK/IspE
3
0.09%
ADC
2
0.06%
DWF1
2
0.06%
DXR
2
0.06%
TDC
1
0.03%
HYD1
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
PMK
1
0.03%
MDS/IspF
1
0.03%
HMGS
1
0.03%
HDR/IspH
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 442 | 19 | BAHD (179) | View species results |
| Alkaloid pathway | 314 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 303 | 12 | POD (140) | View species results |
| Flavonoid pathway | 172 | 10 | UFGT (118) | View species results |
| Rosmarinic acid pathway | 108 | 7 | C4H (44) | View species results |
| Steroid pathway | 101 | 12 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1376 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 265 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Alyrscaffold_10018350.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Alyrscaffold_10040500.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_10040510.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_10052160.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_20063210.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_20063230.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_20063250.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_20066850.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Alyrscaffold_20075750.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_30099840.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_30099860.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_3450124930.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_40126560.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_40133610.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Alyrscaffold_40136080.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_40156800.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_40156810.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_40158480.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_40158490.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_40158500.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_40158500.2 | Alkaloid | SLS | medium | pass | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_50181750.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Alyrscaffold_70236390.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_70236400.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_70236410.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_70236420.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_70249280.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_70263930.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Alyrscaffold_70272990.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Alyrscaffold_70273480.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_70273970.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Alyrscaffold_80289990.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |