PlantSME Plant secondary metabolism enzyme database

Arabidopsis lyrata (arabidopsis_lyrata)

Imported from atlas release summary for Arabidopsis lyrata.

1440
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.69% Alkaloid pathway 21.81% Phenylpropanoid pathway 21.04% Flavonoid pathway 11.94% Rosmarinic acid pathway 7.5% Steroid pathway 7.01%
Family Distribution
C4H 6.2% BAHD 6.17% C3'H/CYP98A 6.12% POD 4.32% CYP76 4.12% UGT 3.97% IFS 3.89% UFGT 3.63%
Other Families 61.58%
More Families (94)
7DLGT 121 3.46% T3O 118 3.37% 4CL 114 3.26% NMT 101 2.89% DWF4/CYP90B1 93 2.66% BR6OX2/CYP85A2 85 2.43% F3H 81 2.32% F3'H/CYP75B 63 1.8% SMT1/SMT2/SMT3 59 1.69% CYP71 56 1.6% SGD 55 1.57% STR 55 1.57% CODM/T6ODM 50 1.43% CAS 48 1.37% CSE 47 1.34% TRI/TRII 45 1.29% H6H 39 1.11% CAD 34 0.97% T16H 32 0.91% SLS 32 0.91% IFR 32 0.91% BBE 31 0.89% IO 29 0.83% TPS 29 0.83% PYKS 28 0.8% FNS 26 0.74% HCT 26 0.74% LAC 26 0.74% GES 25 0.71% ANR 24 0.69% F5H/CYP84A 24 0.69% TAT 24 0.69% RAS 23 0.66% COMT 22 0.63% G8O/G8H 21 0.6% CYP90D1 21 0.6% GS 20 0.57% CCR 20 0.57% NCS 17 0.49% LAMT 17 0.49% F3'5'H/CYP75A 17 0.49% BR6OX1/CYP85A1 17 0.49% 8HGO 15 0.43% PAL 15 0.43% 16OMT 14 0.4% CPD/CYP90A1 14 0.4% ANS/LDOX 13 0.37% CPR 13 0.37% GGPPS 13 0.37% FPPS 13 0.37% CNMT 12 0.34% SQE 11 0.31% 7DLH 10 0.29% COR 10 0.29% CYP51G1 10 0.29% PMT 8 0.23% TYDC_DDC 8 0.23% CYP719 8 0.23% DFR 8 0.23% AACT 8 0.23% CCoAOMT 7 0.2% ROT3/CYP90C1 6 0.17% MVD 6 0.17% CYP80B1 5 0.14% CHI 5 0.14% SMO1/SMO2 5 0.14% SQS/FDFT1 5 0.14% CYP80F1 4 0.11% CHS 4 0.11% FLS 4 0.11% DWF7 4 0.11% HMGR 4 0.11% IDI 4 0.11% DXS 4 0.11% MPO 3 0.09% ISY 3 0.09% HPPR 3 0.09% DET2 3 0.09% MCT/IspD 3 0.09% MVK 3 0.09% CMK/IspE 3 0.09% ADC 2 0.06% DWF1 2 0.06% DXR 2 0.06% TDC 1 0.03% HYD1 1 0.03% DWF5 1 0.03% FK 1 0.03% CPI1 1 0.03% PMK 1 0.03% MDS/IspF 1 0.03% HMGS 1 0.03% HDR/IspH 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 442 19 BAHD (179) View species results
Alkaloid pathway 314 20 7DLGT (56) View species results
Phenylpropanoid pathway 303 12 POD (140) View species results
Flavonoid pathway 172 10 UFGT (118) View species results
Rosmarinic acid pathway 108 7 C4H (44) View species results
Steroid pathway 101 12 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1376 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 265 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
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Gene Pathway Family Confidence Status Best Target
Alyrscaffold_70267970.1 Alkaloid SGD medium pass SGD__00001__sp_Q8GU20_SG1_RAUSE
Alyrscaffold_80279910.1 Alkaloid SGD medium pass SGD__00001__sp_Q8GU20_SG1_RAUSE
Alyrscaffold_80284990.1 Alkaloid SGD medium pass SGD__00001__sp_Q8GU20_SG1_RAUSE
Alyrscaffold_80293030.1 Alkaloid SGD medium pass SGD__00001__sp_Q8GU20_SG1_RAUSE
Alyrscaffold_80293080.1 Alkaloid SGD medium pass SGD__00001__sp_Q8GU20_SG1_RAUSE