Arabidopsis lyrata (arabidopsis_lyrata)
Imported from atlas release summary for Arabidopsis lyrata.
1748
Candidate Protein Records
1440
Pathway-Level Records
3498
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3498
Family-Level Calls
C4H
6.2%
BAHD
6.17%
C3'H/CYP98A
6.12%
POD
4.32%
CYP76
4.12%
UGT
3.97%
IFS
3.89%
UFGT
3.63%
Other Families
61.58%
More Families (94)
7DLGT
121
3.46%
T3O
118
3.37%
4CL
114
3.26%
NMT
101
2.89%
DWF4/CYP90B1
93
2.66%
BR6OX2/CYP85A2
85
2.43%
F3H
81
2.32%
F3'H/CYP75B
63
1.8%
SMT1/SMT2/SMT3
59
1.69%
CYP71
56
1.6%
SGD
55
1.57%
STR
55
1.57%
CODM/T6ODM
50
1.43%
CAS
48
1.37%
CSE
47
1.34%
TRI/TRII
45
1.29%
H6H
39
1.11%
CAD
34
0.97%
T16H
32
0.91%
SLS
32
0.91%
IFR
32
0.91%
BBE
31
0.89%
IO
29
0.83%
TPS
29
0.83%
PYKS
28
0.8%
FNS
26
0.74%
HCT
26
0.74%
LAC
26
0.74%
GES
25
0.71%
ANR
24
0.69%
F5H/CYP84A
24
0.69%
TAT
24
0.69%
RAS
23
0.66%
COMT
22
0.63%
G8O/G8H
21
0.6%
CYP90D1
21
0.6%
GS
20
0.57%
CCR
20
0.57%
NCS
17
0.49%
LAMT
17
0.49%
F3'5'H/CYP75A
17
0.49%
BR6OX1/CYP85A1
17
0.49%
8HGO
15
0.43%
PAL
15
0.43%
16OMT
14
0.4%
CPD/CYP90A1
14
0.4%
ANS/LDOX
13
0.37%
CPR
13
0.37%
GGPPS
13
0.37%
FPPS
13
0.37%
CNMT
12
0.34%
SQE
11
0.31%
7DLH
10
0.29%
COR
10
0.29%
CYP51G1
10
0.29%
PMT
8
0.23%
TYDC_DDC
8
0.23%
CYP719
8
0.23%
DFR
8
0.23%
AACT
8
0.23%
CCoAOMT
7
0.2%
ROT3/CYP90C1
6
0.17%
MVD
6
0.17%
CYP80B1
5
0.14%
CHI
5
0.14%
SMO1/SMO2
5
0.14%
SQS/FDFT1
5
0.14%
CYP80F1
4
0.11%
CHS
4
0.11%
FLS
4
0.11%
DWF7
4
0.11%
HMGR
4
0.11%
IDI
4
0.11%
DXS
4
0.11%
MPO
3
0.09%
ISY
3
0.09%
HPPR
3
0.09%
DET2
3
0.09%
MCT/IspD
3
0.09%
MVK
3
0.09%
CMK/IspE
3
0.09%
ADC
2
0.06%
DWF1
2
0.06%
DXR
2
0.06%
TDC
1
0.03%
HYD1
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
PMK
1
0.03%
MDS/IspF
1
0.03%
HMGS
1
0.03%
HDR/IspH
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 442 | 19 | BAHD (179) | View species results |
| Alkaloid pathway | 314 | 20 | 7DLGT (56) | View species results |
| Phenylpropanoid pathway | 303 | 12 | POD (140) | View species results |
| Flavonoid pathway | 172 | 10 | UFGT (118) | View species results |
| Rosmarinic acid pathway | 108 | 7 | C4H (44) | View species results |
| Steroid pathway | 101 | 12 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1376 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 265 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Alyrscaffold_40137110.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40137110.2 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40137120.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40137130.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40137140.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40137150.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40137160.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40137170.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40137180.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40137190.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40138670.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40146570.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40158710.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40158730.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_40158740.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_410159890.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_410159900.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_50165690.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_50165700.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_50170000.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_50180010.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_60195640.1 | Alkaloid | TRI/TRII | low | borderline |
| Alyrscaffold_60198280.1 | Alkaloid | TRI/TRII | low | borderline |
| Alyrscaffold_60199640.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_60212340.1 | Alkaloid | TRI/TRII | low | borderline |
| Alyrscaffold_60228770.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_60230720.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_80287580.1 | Alkaloid | TRI/TRII | low | borderline |
| Alyrscaffold_80288270.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_840308100.1 | Alkaloid | TRI/TRII | medium | pass |
| Alyrscaffold_90309000.1 | Alkaloid | TRI/TRII | low | borderline |
| Alyrscaffold_10038640.1 | Alkaloid | TYDC_DDC | low | borderline |
| Alyrscaffold_30123660.1 | Alkaloid | TYDC_DDC | medium | borderline |
| Alyrscaffold_30123660.2 | Alkaloid | TYDC_DDC | medium | borderline |
| Alyrscaffold_30123660.3 | Alkaloid | TYDC_DDC | medium | borderline |
| Alyrscaffold_30123660.4 | Alkaloid | TYDC_DDC | medium | borderline |
| Alyrscaffold_30123660.5 | Alkaloid | TYDC_DDC | medium | borderline |
| Alyrscaffold_70248220.1 | Alkaloid | TYDC_DDC | medium | borderline |
| Alyrscaffold_80292710.1 | Alkaloid | TYDC_DDC | low | borderline |