PlantSME Plant secondary metabolism enzyme database

Asparagus setaceus (asparagus_setaceus)

Imported from atlas release summary for Asparagus setaceus.

1424
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.53% Alkaloid pathway 25.07% Phenylpropanoid pathway 20.01% Flavonoid pathway 13.41% Rosmarinic acid pathway 8.08% Steroid pathway 5.9%
Family Distribution
C4H 6.73% C3'H/CYP98A 6.14% BAHD 5.35% 4CL 4.73% UGT 4.39% CYP76 4.0% IFS 3.66% 7DLGT 3.41%
Other Families 61.61%
More Families (96)
POD 120 3.38% UFGT 116 3.26% T3O 112 3.15% F3H 105 2.96% BR6OX2/CYP85A2 76 2.14% NMT 73 2.05% H6H 73 2.05% STR 66 1.86% F3'H/CYP75B 66 1.86% DWF4/CYP90B1 66 1.86% G8O/G8H 53 1.49% CAD 46 1.29% CODM/T6ODM 44 1.24% T16H 43 1.21% CYP71 43 1.21% SGD 40 1.13% TRI/TRII 40 1.13% SMT1/SMT2/SMT3 40 1.13% CAS 37 1.04% FNS 36 1.01% LAC 36 1.01% RAS 36 1.01% COMT 33 0.93% HCT 32 0.9% PYKS 29 0.82% IFR 29 0.82% CYP90D1 29 0.82% PMT 27 0.76% F3'5'H/CYP75A 27 0.76% CSE 27 0.76% TPS 25 0.7% GES 24 0.68% PAL 24 0.68% IO 23 0.65% NCS 23 0.65% ANR 22 0.62% GS 20 0.56% SLS 20 0.56% CCR 20 0.56% 7DLH 18 0.51% 16OMT 18 0.51% CPD/CYP90A1 18 0.51% COR 17 0.48% F5H/CYP84A 15 0.42% CHS 14 0.39% ROT3/CYP90C1 14 0.39% BR6OX1/CYP85A1 13 0.37% FPPS 13 0.37% BBE 11 0.31% DFR 11 0.31% ANS/LDOX 11 0.31% SQS/FDFT1 11 0.31% 8HGO 10 0.28% CNMT 10 0.28% CPR 10 0.28% CCoAOMT 9 0.25% MPO 8 0.23% LAMT 8 0.23% CYP80B1 7 0.2% TDC 7 0.2% ISY 7 0.2% FLS 7 0.2% TAT 7 0.2% DET2 7 0.2% AACT 7 0.2% MVK 7 0.2% TYDC_DDC 6 0.17% CYP719 6 0.17% MVD 6 0.17% HPPR 5 0.14% SMO1/SMO2 5 0.14% DWF1 5 0.14% GGPPS 5 0.14% ODC 4 0.11% CHI 4 0.11% SQE 4 0.11% CYP51G1 4 0.11% MCT/IspD 4 0.11% DXS 4 0.11% ADC 3 0.08% DWF7 3 0.08% PMK 3 0.08% IDI 3 0.08% XMT_MXMT_DXMT 2 0.06% 6OMT_4OMT_SOMT 2 0.06% FK 2 0.06% HYD1 2 0.06% DXR 2 0.06% HMGR 2 0.06% CYP80F1 1 0.03% DWF5 1 0.03% CPI1 1 0.03% HMGS 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03% CMK/IspE 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 392 18 UGT (138) View species results
Alkaloid pathway 357 21 7DLGT (65) View species results
Phenylpropanoid pathway 285 12 POD (102) View species results
Flavonoid pathway 191 14 UFGT (105) View species results
Rosmarinic acid pathway 115 7 4CL (40) View species results
Steroid pathway 84 12 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1383 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 258 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
Aset01G0001650.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Aset02G0006460.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Aset06G0002030.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Aset06G0002060.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Aset06G0002100.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Aset09G0013310.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO