PlantSME Plant secondary metabolism enzyme database

Barbarea vulgaris (barbarea_vulgaris)

Imported from atlas release summary for Barbarea vulgaris.

1167
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.88% Phenylpropanoid pathway 22.62% Alkaloid pathway 22.45% Flavonoid pathway 11.23% Steroid pathway 7.54% Rosmarinic acid pathway 7.28%
Family Distribution
BAHD 6.64% C4H 6.0% C3'H/CYP98A 5.69% POD 4.34% 4CL 4.27% CYP76 3.66% IFS 3.53% UGT 3.29%
Other Families 62.58%
More Families (95)
NMT 91 3.08% UFGT 83 2.81% 7DLGT 80 2.71% T3O 80 2.71% F3H 78 2.64% DWF4/CYP90B1 73 2.47% F3'H/CYP75B 62 2.1% BR6OX2/CYP85A2 62 2.1% CODM/T6ODM 60 2.03% SGD 55 1.86% SMT1/SMT2/SMT3 55 1.86% STR 48 1.63% CSE 47 1.59% CYP71 43 1.46% H6H 40 1.36% TRI/TRII 38 1.29% CAS 38 1.29% IFR 32 1.08% FNS 30 1.02% SLS 29 0.98% CAD 29 0.98% G8O/G8H 28 0.95% BBE 27 0.92% IO 26 0.88% LAC 26 0.88% T16H 24 0.81% TPS 24 0.81% LAMT 23 0.78% PYKS 22 0.75% TAT 22 0.75% CYP90D1 22 0.75% F5H/CYP84A 21 0.71% GES 19 0.64% ANR 19 0.64% COMT 19 0.64% CCR 19 0.64% RAS 19 0.64% PAL 18 0.61% HCT 17 0.58% ANS/LDOX 16 0.54% 7DLH 14 0.47% CYP51G1 14 0.47% GS 13 0.44% CNMT 12 0.41% BR6OX1/CYP85A1 12 0.41% CPD/CYP90A1 12 0.41% NCS 11 0.37% 8HGO 11 0.37% GGPPS 11 0.37% 16OMT 10 0.34% PMT 9 0.31% DFR 9 0.31% F3'5'H/CYP75A 9 0.31% SQE 8 0.27% MPO 7 0.24% COR 7 0.24% CYP719 6 0.2% CCoAOMT 6 0.2% ROT3/CYP90C1 6 0.2% FPPS 6 0.2% AACT 6 0.2% CHI 5 0.17% CPR 5 0.17% SQS/FDFT1 5 0.17% SMO1/SMO2 5 0.17% CYP80B1 4 0.14% CHS 4 0.14% DWF7 4 0.14% MVD 4 0.14% HPPR 3 0.1% MVK 3 0.1% ADC 2 0.07% XMT_MXMT_DXMT 2 0.07% ISY 2 0.07% TYDC_DDC 2 0.07% CYP80F1 2 0.07% TDC 2 0.07% FLS 2 0.07% HYD1 2 0.07% DET2 2 0.07% HDS/IspG 2 0.07% MDS/IspF 2 0.07% IDI 2 0.07% CMK/IspE 2 0.07% HMGR 2 0.07% DXS 2 0.07% MCT/IspD 2 0.07% HDR/IspH 2 0.07% DWF1 1 0.03% CPI1 1 0.03% DWF5 1 0.03% FK 1 0.03% HMGS 1 0.03% DXR 1 0.03% PMK 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 337 19 BAHD (155) View species results
Phenylpropanoid pathway 264 12 POD (116) View species results
Alkaloid pathway 262 22 NMT (55) View species results
Flavonoid pathway 131 11 UFGT (77) View species results
Steroid pathway 88 10 SMT1/SMT2/SMT3 (36) View species results
Rosmarinic acid pathway 85 7 C4H (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1106 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 232 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
BAvulContig20330075930.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
BAvulContig2130080770.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
BAvulContig2270087370.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
BAvulContig340135000.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
BAvulContig6050197830.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
BAvulContig7870232500.1 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
BAvulContig9140245880.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO