Barbarea vulgaris (barbarea_vulgaris)
Imported from atlas release summary for Barbarea vulgaris.
1167
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1167
Candidate Genes
BAHD
6.64%
C4H
6.0%
C3'H/CYP98A
5.69%
POD
4.34%
4CL
4.27%
CYP76
3.66%
IFS
3.53%
UGT
3.29%
Other Families
62.58%
More Families (95)
NMT
91
3.08%
UFGT
83
2.81%
7DLGT
80
2.71%
T3O
80
2.71%
F3H
78
2.64%
DWF4/CYP90B1
73
2.47%
F3'H/CYP75B
62
2.1%
BR6OX2/CYP85A2
62
2.1%
CODM/T6ODM
60
2.03%
SGD
55
1.86%
SMT1/SMT2/SMT3
55
1.86%
STR
48
1.63%
CSE
47
1.59%
CYP71
43
1.46%
H6H
40
1.36%
TRI/TRII
38
1.29%
CAS
38
1.29%
IFR
32
1.08%
FNS
30
1.02%
SLS
29
0.98%
CAD
29
0.98%
G8O/G8H
28
0.95%
BBE
27
0.92%
IO
26
0.88%
LAC
26
0.88%
T16H
24
0.81%
TPS
24
0.81%
LAMT
23
0.78%
PYKS
22
0.75%
TAT
22
0.75%
CYP90D1
22
0.75%
F5H/CYP84A
21
0.71%
GES
19
0.64%
ANR
19
0.64%
COMT
19
0.64%
CCR
19
0.64%
RAS
19
0.64%
PAL
18
0.61%
HCT
17
0.58%
ANS/LDOX
16
0.54%
7DLH
14
0.47%
CYP51G1
14
0.47%
GS
13
0.44%
CNMT
12
0.41%
BR6OX1/CYP85A1
12
0.41%
CPD/CYP90A1
12
0.41%
NCS
11
0.37%
8HGO
11
0.37%
GGPPS
11
0.37%
16OMT
10
0.34%
PMT
9
0.31%
DFR
9
0.31%
F3'5'H/CYP75A
9
0.31%
SQE
8
0.27%
MPO
7
0.24%
COR
7
0.24%
CYP719
6
0.2%
CCoAOMT
6
0.2%
ROT3/CYP90C1
6
0.2%
FPPS
6
0.2%
AACT
6
0.2%
CHI
5
0.17%
CPR
5
0.17%
SQS/FDFT1
5
0.17%
SMO1/SMO2
5
0.17%
CYP80B1
4
0.14%
CHS
4
0.14%
DWF7
4
0.14%
MVD
4
0.14%
HPPR
3
0.1%
MVK
3
0.1%
ADC
2
0.07%
XMT_MXMT_DXMT
2
0.07%
ISY
2
0.07%
TYDC_DDC
2
0.07%
CYP80F1
2
0.07%
TDC
2
0.07%
FLS
2
0.07%
HYD1
2
0.07%
DET2
2
0.07%
HDS/IspG
2
0.07%
MDS/IspF
2
0.07%
IDI
2
0.07%
CMK/IspE
2
0.07%
HMGR
2
0.07%
DXS
2
0.07%
MCT/IspD
2
0.07%
HDR/IspH
2
0.07%
DWF1
1
0.03%
CPI1
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HMGS
1
0.03%
DXR
1
0.03%
PMK
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 337 | 19 | BAHD (155) | View species results |
| Phenylpropanoid pathway | 264 | 12 | POD (116) | View species results |
| Alkaloid pathway | 262 | 22 | NMT (55) | View species results |
| Flavonoid pathway | 131 | 11 | UFGT (77) | View species results |
| Steroid pathway | 88 | 10 | SMT1/SMT2/SMT3 (36) | View species results |
| Rosmarinic acid pathway | 85 | 7 | C4H (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1106 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 232 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BAvulContig12550025040.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig15500047900.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig22140084880.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig2620103710.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig27490110190.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig28720114830.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig28720114840.1 | Alkaloid | LAMT | medium | pass | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig28720114860.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig28720114870.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig2960117630.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig3020118930.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig3710145120.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig3870150260.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig3870150280.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig390151810.1 | Alkaloid | LAMT | medium | pass | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig420159660.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig43400163620.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig50290176300.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig570190730.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig7060217470.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig76830229020.1 | Alkaloid | LAMT | medium | pass | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig78670232460.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| BAvulContig9100245640.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |