PlantSME Plant secondary metabolism enzyme database

Barbarea vulgaris (barbarea_vulgaris)

Imported from atlas release summary for Barbarea vulgaris.

1167
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 337 19 BAHD (155) View species results
Phenylpropanoid pathway 264 12 POD (116) View species results
Alkaloid pathway 262 22 NMT (55) View species results
Flavonoid pathway 131 11 UFGT (77) View species results
Steroid pathway 88 10 SMT1/SMT2/SMT3 (36) View species results
Rosmarinic acid pathway 85 7 C4H (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1106 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 232 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
BAvulContig28500114310.1 Flavonoid ANR medium borderline
BAvulContig3120123990.1 Flavonoid ANR low borderline
BAvulContig3240128840.1 Flavonoid ANR low borderline
BAvulContig3240128860.1 Flavonoid ANR medium borderline
BAvulContig33490132550.1 Flavonoid ANR low borderline
BAvulContig3570140750.1 Flavonoid ANR medium borderline
BAvulContig36600143390.1 Flavonoid ANR high pass
BAvulContig3980153490.1 Flavonoid ANR low borderline
BAvulContig5930195470.1 Flavonoid ANR medium borderline
BAvulContig64620205440.1 Flavonoid ANR medium borderline
BAvulContig9550249350.1 Flavonoid ANR low borderline
BAvulContig10190001670.1 Flavonoid ANS/LDOX medium borderline
BAvulContig10660005780.1 Flavonoid ANS/LDOX medium borderline
BAvulContig12110020710.1 Flavonoid ANS/LDOX medium borderline
BAvulContig12110020760.1 Flavonoid ANS/LDOX medium borderline
BAvulContig12110020770.1 Flavonoid ANS/LDOX medium borderline
BAvulContig16320053040.1 Flavonoid ANS/LDOX medium borderline
BAvulContig1700056610.1 Flavonoid ANS/LDOX medium borderline
BAvulContig1700056620.1 Flavonoid ANS/LDOX medium borderline
BAvulContig19050069730.1 Flavonoid ANS/LDOX medium borderline
BAvulContig23270090370.1 Flavonoid ANS/LDOX medium pass
BAvulContig31830126490.1 Flavonoid ANS/LDOX medium borderline
BAvulContig4640169280.1 Flavonoid ANS/LDOX medium borderline
BAvulContig5420185030.1 Flavonoid ANS/LDOX medium borderline
BAvulContig5420185060.1 Flavonoid ANS/LDOX medium borderline
BAvulContig5630189190.1 Flavonoid ANS/LDOX medium borderline
BAvulContig66180208480.1 Flavonoid ANS/LDOX medium borderline
BAvulContig10650005740.1 Flavonoid C4H low borderline
BAvulContig1100008910.1 Flavonoid C4H low borderline
BAvulContig11080010150.1 Flavonoid C4H medium borderline
BAvulContig14420040100.1 Flavonoid C4H medium borderline
BAvulContig390151590.1 Flavonoid C4H low borderline
BAvulContig48870173810.1 Flavonoid C4H low borderline
BAvulContig49470175050.1 Flavonoid C4H medium borderline
BAvulContig5220180570.1 Flavonoid C4H medium borderline
BAvulContig21610082440.1 Flavonoid CHI medium pass
BAvulContig21610082450.1 Flavonoid CHI medium pass
BAvulContig3070121320.1 Flavonoid CHI medium pass
BAvulContig45560166870.1 Flavonoid CHI low borderline
BAvulContig5110178270.1 Flavonoid CHI low borderline
BAvulContig3400135430.1 Flavonoid CHS medium pass
BAvulContig3510139280.1 Flavonoid CHS medium pass
BAvulContig61730200650.1 Flavonoid CHS medium pass
BAvulContig6650208900.1 Flavonoid CHS medium pass
BAvulContig10870007800.1 Flavonoid DFR medium borderline
BAvulContig11630015460.1 Flavonoid DFR medium borderline
BAvulContig12920028100.1 Flavonoid DFR medium borderline
BAvulContig1540046720.1 Flavonoid DFR low borderline
BAvulContig28500114300.1 Flavonoid DFR medium borderline
BAvulContig5580187750.1 Flavonoid DFR medium borderline