PlantSME Plant secondary metabolism enzyme database

Beta vulgaris (beta_vulgaris)

Imported from atlas release summary for Beta vulgaris.

1080
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.96% Phenylpropanoid pathway 22.41% Alkaloid pathway 21.48% Flavonoid pathway 14.35% Rosmarinic acid pathway 8.61% Steroid pathway 5.19%
Family Distribution
C4H 6.64% C3'H/CYP98A 6.36% BAHD 5.8% POD 4.54% CYP76 3.98% 4CL 3.91% UFGT 3.74% UGT 3.7%
Other Families 61.31%
More Families (96)
7DLGT 102 3.57% T3O 100 3.5% IFS 96 3.36% F3H 84 2.94% NMT 71 2.48% F3'H/CYP75B 69 2.41% DWF4/CYP90B1 67 2.34% BR6OX2/CYP85A2 49 1.71% CODM/T6ODM 45 1.57% H6H 44 1.54% STR 44 1.54% CYP71 41 1.43% SMT1/SMT2/SMT3 37 1.29% TRI/TRII 35 1.22% PYKS 33 1.15% COMT 32 1.12% HCT 31 1.08% CYP90D1 28 0.98% RAS 27 0.94% SLS 26 0.91% TPS 26 0.91% CAD 25 0.87% G8O/G8H 24 0.84% 16OMT 24 0.84% LAC 24 0.84% CYP51G1 24 0.84% GES 22 0.77% IFR 22 0.77% PMT 21 0.73% SGD 21 0.73% FNS 20 0.7% CSE 20 0.7% F3'5'H/CYP75A 19 0.66% BR6OX1/CYP85A1 19 0.66% IO 18 0.63% T16H 17 0.59% 7DLH 17 0.59% BBE 16 0.56% CAS 16 0.56% LAMT 14 0.49% GS 14 0.49% NCS 14 0.49% CHS 14 0.49% CCR 12 0.42% TAT 12 0.42% F5H/CYP84A 11 0.38% 8HGO 10 0.35% FPPS 10 0.35% MPO 9 0.31% TYDC_DDC 9 0.31% ANR 9 0.31% ANS/LDOX 9 0.31% DFR 9 0.31% CPD/CYP90A1 9 0.31% COR 8 0.28% SQS/FDFT1 8 0.28% HYD1 8 0.28% CNMT 6 0.21% CYP719 6 0.21% CHI 6 0.21% CCoAOMT 6 0.21% CPR 6 0.21% AACT 6 0.21% CYP80B1 5 0.17% ISY 5 0.17% ROT3/CYP90C1 5 0.17% GGPPS 4 0.14% MVK 4 0.14% XMT_MXMT_DXMT 3 0.1% PAL 3 0.1% HPPR 3 0.1% SQE 3 0.1% DWF7 3 0.1% DXS 3 0.1% MCT/IspD 3 0.1% TDC 2 0.07% ADC 2 0.07% 6OMT_4OMT_SOMT 2 0.07% FLS 2 0.07% DET2 2 0.07% SMO1/SMO2 2 0.07% PMK 2 0.07% MVD 2 0.07% ODC 1 0.03% CYP80F1 1 0.03% CPI1 1 0.03% FK 1 0.03% DWF5 1 0.03% DWF1 1 0.03% IDI 1 0.03% HMGS 1 0.03% MDS/IspF 1 0.03% CMK/IspE 1 0.03% HMGR 1 0.03% HDR/IspH 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 302 18 BAHD (115) View species results
Phenylpropanoid pathway 242 11 POD (117) View species results
Alkaloid pathway 232 21 7DLGT (47) View species results
Flavonoid pathway 155 10 UFGT (102) View species results
Rosmarinic acid pathway 93 7 C4H (43) View species results
Steroid pathway 56 13 SMT1/SMT2/SMT3 (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1137 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 224 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
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Gene Pathway Family Confidence Status Best Target
BEvul01G0018670.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
BEvul03G0001370.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
BEvul03G0010940.1 Flavonoid DFR medium borderline DFR__00002__sp_Q84KP0_DFRA_PYRCO
BEvul04G0027340.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
BEvul05G0016890.1 Flavonoid DFR medium pass DFR__00001__sp_Q500U8_TKPR1_ARATH
BEvul06G0008680.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
BEvul06G0016010.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
BEvul07G0001360.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH
BEvul09G0015710.1 Flavonoid DFR medium borderline DFR__00001__sp_Q500U8_TKPR1_ARATH