Betula pendula (betula_pendula)
Imported from atlas release summary for Betula pendula.
1803
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1803
Candidate Genes
C4H
6.36%
C3'H/CYP98A
6.06%
UGT
5.05%
BAHD
4.71%
7DLGT
4.5%
UFGT
4.5%
IFS
4.08%
CYP76
3.91%
Other Families
60.84%
More Families (97)
POD
148
3.45%
T3O
139
3.24%
4CL
123
2.87%
DWF4/CYP90B1
104
2.42%
F3H
96
2.24%
F3'H/CYP75B
92
2.14%
CAD
92
2.14%
BR6OX2/CYP85A2
79
1.84%
TRI/TRII
76
1.77%
STR
75
1.75%
CAS
71
1.65%
NMT
65
1.51%
CODM/T6ODM
61
1.42%
TPS
60
1.4%
GES
56
1.3%
CYP71
53
1.23%
LAC
51
1.19%
SMT1/SMT2/SMT3
50
1.16%
CYP90D1
46
1.07%
T16H
45
1.05%
COMT
44
1.02%
GS
41
0.96%
H6H
40
0.93%
G8O/G8H
39
0.91%
BBE
35
0.82%
HCT
35
0.82%
7DLH
33
0.77%
IFR
33
0.77%
RAS
33
0.77%
CSE
31
0.72%
PAL
30
0.7%
16OMT
29
0.68%
SLS
29
0.68%
PMT
29
0.68%
PYKS
28
0.65%
ANR
25
0.58%
F5H/CYP84A
25
0.58%
TAT
23
0.54%
BR6OX1/CYP85A1
23
0.54%
IO
22
0.51%
FNS
21
0.49%
CCR
21
0.49%
SGD
20
0.47%
COR
20
0.47%
NCS
19
0.44%
CYP51G1
19
0.44%
F3'5'H/CYP75A
18
0.42%
CPD/CYP90A1
17
0.4%
DFR
16
0.37%
8HGO
12
0.28%
ANS/LDOX
11
0.26%
CPR
11
0.26%
ROT3/CYP90C1
11
0.26%
FPPS
11
0.26%
TYDC_DDC
10
0.23%
MPO
10
0.23%
CYP80B1
10
0.23%
LAMT
10
0.23%
ISY
9
0.21%
CCoAOMT
9
0.21%
HPPR
8
0.19%
AACT
8
0.19%
GGPPS
8
0.19%
CNMT
7
0.16%
CHI
6
0.14%
ADC
5
0.12%
6OMT_4OMT_SOMT
5
0.12%
CHS
5
0.12%
SQS/FDFT1
5
0.12%
DXS
5
0.12%
MVD
5
0.12%
CYP719
4
0.09%
DWF1
4
0.09%
SQE
4
0.09%
DET2
3
0.07%
HMGS
3
0.07%
HMGR
3
0.07%
MCT/IspD
3
0.07%
MVK
3
0.07%
TDC
2
0.05%
FLS
2
0.05%
SMO1/SMO2
2
0.05%
HYD1
2
0.05%
CPI1
2
0.05%
DXR
2
0.05%
ODC
1
0.02%
CYP80F1
1
0.02%
XMT_MXMT_DXMT
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
DWF7
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
HDR/IspH
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 521 | 19 | UGT (205) | View species results |
| Alkaloid pathway | 397 | 24 | 7DLGT (95) | View species results |
| Phenylpropanoid pathway | 357 | 12 | POD (137) | View species results |
| Flavonoid pathway | 254 | 12 | UFGT (181) | View species results |
| Rosmarinic acid pathway | 155 | 7 | C4H (72) | View species results |
| Steroid pathway | 119 | 14 | CAS (64) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1685 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 270 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BpenContig00000070.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| BpenContig10003060.1 | Alkaloid | NMT | medium | pass | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| BpenContig10290006880.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| BpenContig10890013660.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| BpenContig12600033310.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| BpenContig12890036660.1 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BpenContig1290037650.1 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| BpenContig1470055400.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| BpenContig14900057360.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| BpenContig150057930.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| BpenContig150059470.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| BpenContig150060180.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| BpenContig15530065270.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BpenContig1610073160.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| BpenContig16570077480.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BpenContig16700078680.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| BpenContig17020081640.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BpenContig17210082670.1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| BpenContig1770084970.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| BpenContig17910086530.1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| BpenContig19720098810.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BpenContig20010100200.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| BpenContig20180100730.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| BpenContig2150107300.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| BpenContig2150107410.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| BpenContig2150107430.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| BpenContig220109930.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| BpenContig22720115120.1 | Alkaloid | NMT | medium | pass | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| BpenContig2280115280.1 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| BpenContig2400121090.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| BpenContig2420122110.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| BpenContig2610129240.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| BpenContig2670131810.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| BpenContig270133000.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| BpenContig2740135280.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| BpenContig2830140320.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| BpenContig2920144570.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| BpenContig30560148290.1 | Alkaloid | NMT | medium | borderline | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| BpenContig3070148550.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| BpenContig33980155960.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BpenContig3570161110.1 | Alkaloid | NMT | medium | pass | NMT__00030__sp_Q43088_RBCMT_PEA |
| BpenContig370164530.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| BpenContig4110175090.1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| BpenContig4130175230.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BpenContig4130175240.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BpenContig4130175280.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| BpenContig4250178580.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| BpenContig4510187000.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| BpenContig4720191540.1 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| BpenContig4800193880.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |