Betula pendula (betula_pendula)
Imported from atlas release summary for Betula pendula.
1803
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1803
Candidate Genes
C4H
6.36%
C3'H/CYP98A
6.06%
UGT
5.05%
BAHD
4.71%
7DLGT
4.5%
UFGT
4.5%
IFS
4.08%
CYP76
3.91%
Other Families
60.84%
More Families (97)
POD
148
3.45%
T3O
139
3.24%
4CL
123
2.87%
DWF4/CYP90B1
104
2.42%
F3H
96
2.24%
F3'H/CYP75B
92
2.14%
CAD
92
2.14%
BR6OX2/CYP85A2
79
1.84%
TRI/TRII
76
1.77%
STR
75
1.75%
CAS
71
1.65%
NMT
65
1.51%
CODM/T6ODM
61
1.42%
TPS
60
1.4%
GES
56
1.3%
CYP71
53
1.23%
LAC
51
1.19%
SMT1/SMT2/SMT3
50
1.16%
CYP90D1
46
1.07%
T16H
45
1.05%
COMT
44
1.02%
GS
41
0.96%
H6H
40
0.93%
G8O/G8H
39
0.91%
BBE
35
0.82%
HCT
35
0.82%
7DLH
33
0.77%
IFR
33
0.77%
RAS
33
0.77%
CSE
31
0.72%
PAL
30
0.7%
16OMT
29
0.68%
SLS
29
0.68%
PMT
29
0.68%
PYKS
28
0.65%
ANR
25
0.58%
F5H/CYP84A
25
0.58%
TAT
23
0.54%
BR6OX1/CYP85A1
23
0.54%
IO
22
0.51%
FNS
21
0.49%
CCR
21
0.49%
SGD
20
0.47%
COR
20
0.47%
NCS
19
0.44%
CYP51G1
19
0.44%
F3'5'H/CYP75A
18
0.42%
CPD/CYP90A1
17
0.4%
DFR
16
0.37%
8HGO
12
0.28%
ANS/LDOX
11
0.26%
CPR
11
0.26%
ROT3/CYP90C1
11
0.26%
FPPS
11
0.26%
TYDC_DDC
10
0.23%
MPO
10
0.23%
CYP80B1
10
0.23%
LAMT
10
0.23%
ISY
9
0.21%
CCoAOMT
9
0.21%
HPPR
8
0.19%
AACT
8
0.19%
GGPPS
8
0.19%
CNMT
7
0.16%
CHI
6
0.14%
ADC
5
0.12%
6OMT_4OMT_SOMT
5
0.12%
CHS
5
0.12%
SQS/FDFT1
5
0.12%
DXS
5
0.12%
MVD
5
0.12%
CYP719
4
0.09%
DWF1
4
0.09%
SQE
4
0.09%
DET2
3
0.07%
HMGS
3
0.07%
HMGR
3
0.07%
MCT/IspD
3
0.07%
MVK
3
0.07%
TDC
2
0.05%
FLS
2
0.05%
SMO1/SMO2
2
0.05%
HYD1
2
0.05%
CPI1
2
0.05%
DXR
2
0.05%
ODC
1
0.02%
CYP80F1
1
0.02%
XMT_MXMT_DXMT
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
DWF7
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
HDR/IspH
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 521 | 19 | UGT (205) | View species results |
| Alkaloid pathway | 397 | 24 | 7DLGT (95) | View species results |
| Phenylpropanoid pathway | 357 | 12 | POD (137) | View species results |
| Flavonoid pathway | 254 | 12 | UFGT (181) | View species results |
| Rosmarinic acid pathway | 155 | 7 | C4H (72) | View species results |
| Steroid pathway | 119 | 14 | CAS (64) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1685 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 270 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BpenContig00001460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig00001470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig00001480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig10250006450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig10470009070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig10780012340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig11050015220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig11480019920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig11520021490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig11520021500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1180024880.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1180024890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1180024900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1180024910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig12060028050.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1210028340.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BpenContig1210028350.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BpenContig1210028900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1290036900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1350043580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1350043590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig13630045530.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BpenContig14460052590.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig14460052600.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig14460052610.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1460054840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig15180061450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1550064920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig15590065570.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| BpenContig1610073330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1620074270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1620074280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1640076360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig16630078240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig17750085580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig18380089950.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1890092540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1890092600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig21380106070.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BpenContig220110730.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| BpenContig2230113150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig23660119060.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig25370126870.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig2860141040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig290143870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig3220151350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig33200154360.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| BpenContig3350155240.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BpenContig3370155520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig3370155530.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |