Betula pendula (betula_pendula)
Imported from atlas release summary for Betula pendula.
1964
Candidate Protein Records
1803
Pathway-Level Records
4293
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4293
Family-Level Calls
C4H
6.36%
C3'H/CYP98A
6.06%
UGT
5.05%
BAHD
4.71%
7DLGT
4.5%
UFGT
4.5%
IFS
4.08%
CYP76
3.91%
Other Families
60.84%
More Families (97)
POD
148
3.45%
T3O
139
3.24%
4CL
123
2.87%
DWF4/CYP90B1
104
2.42%
F3H
96
2.24%
F3'H/CYP75B
92
2.14%
CAD
92
2.14%
BR6OX2/CYP85A2
79
1.84%
TRI/TRII
76
1.77%
STR
75
1.75%
CAS
71
1.65%
NMT
65
1.51%
CODM/T6ODM
61
1.42%
TPS
60
1.4%
GES
56
1.3%
CYP71
53
1.23%
LAC
51
1.19%
SMT1/SMT2/SMT3
50
1.16%
CYP90D1
46
1.07%
T16H
45
1.05%
COMT
44
1.02%
GS
41
0.96%
H6H
40
0.93%
G8O/G8H
39
0.91%
BBE
35
0.82%
HCT
35
0.82%
7DLH
33
0.77%
IFR
33
0.77%
RAS
33
0.77%
CSE
31
0.72%
PAL
30
0.7%
16OMT
29
0.68%
SLS
29
0.68%
PMT
29
0.68%
PYKS
28
0.65%
ANR
25
0.58%
F5H/CYP84A
25
0.58%
TAT
23
0.54%
BR6OX1/CYP85A1
23
0.54%
IO
22
0.51%
FNS
21
0.49%
CCR
21
0.49%
SGD
20
0.47%
COR
20
0.47%
NCS
19
0.44%
CYP51G1
19
0.44%
F3'5'H/CYP75A
18
0.42%
CPD/CYP90A1
17
0.4%
DFR
16
0.37%
8HGO
12
0.28%
ANS/LDOX
11
0.26%
CPR
11
0.26%
ROT3/CYP90C1
11
0.26%
FPPS
11
0.26%
TYDC_DDC
10
0.23%
MPO
10
0.23%
CYP80B1
10
0.23%
LAMT
10
0.23%
ISY
9
0.21%
CCoAOMT
9
0.21%
HPPR
8
0.19%
AACT
8
0.19%
GGPPS
8
0.19%
CNMT
7
0.16%
CHI
6
0.14%
ADC
5
0.12%
6OMT_4OMT_SOMT
5
0.12%
CHS
5
0.12%
SQS/FDFT1
5
0.12%
DXS
5
0.12%
MVD
5
0.12%
CYP719
4
0.09%
DWF1
4
0.09%
SQE
4
0.09%
DET2
3
0.07%
HMGS
3
0.07%
HMGR
3
0.07%
MCT/IspD
3
0.07%
MVK
3
0.07%
TDC
2
0.05%
FLS
2
0.05%
SMO1/SMO2
2
0.05%
HYD1
2
0.05%
CPI1
2
0.05%
DXR
2
0.05%
ODC
1
0.02%
CYP80F1
1
0.02%
XMT_MXMT_DXMT
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
DWF7
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
HDR/IspH
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 521 | 19 | UGT (205) | View species results |
| Alkaloid pathway | 397 | 24 | 7DLGT (95) | View species results |
| Phenylpropanoid pathway | 357 | 12 | POD (137) | View species results |
| Flavonoid pathway | 254 | 12 | UFGT (181) | View species results |
| Rosmarinic acid pathway | 155 | 7 | C4H (72) | View species results |
| Steroid pathway | 119 | 14 | CAS (64) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1685 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 270 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BpenContig1210028900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1290036900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1350043580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1350043590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig13630045530.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BpenContig14460052590.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig14460052600.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig14460052610.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1460054840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig15180061450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1550064920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig15590065570.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| BpenContig1610073330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1620074270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1620074280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1640076360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig16630078240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig17750085580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig18380089950.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1890092540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig1890092600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig21380106070.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BpenContig220110730.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| BpenContig2230113150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig23660119060.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig25370126870.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig2860141040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig290143870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig3220151350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig33200154360.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| BpenContig3350155240.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BpenContig3370155520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig3370155530.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig3370155540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig420177020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig4250178330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig4450184780.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig4450184800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig4610189310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig4610189320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig4610189360.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig4610189380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig4770192590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig4770192620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig4780192800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig510203350.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BpenContig5990226650.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BpenContig6100228140.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| BpenContig7100241270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BpenContig7520245520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |