PlantSME Plant secondary metabolism enzyme database

Bretschneidera sinensis (bretschneidera_sinensis)

Imported from atlas release summary for Bretschneidera sinensis.

2121
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.81% Phenylpropanoid pathway 24.09% Alkaloid pathway 20.98% Flavonoid pathway 12.16% Rosmarinic acid pathway 8.06% Steroid pathway 5.89%
Family Distribution
C4H 5.76% BAHD 5.44% C3'H/CYP98A 4.79% POD 4.48% UGT 4.12% F3H 3.99% CYP76 3.93% 4CL 3.6%
Other Families 63.89%
More Families (98)
7DLGT 187 3.57% UFGT 174 3.32% IFS 162 3.09% NMT 155 2.96% CODM/T6ODM 150 2.86% T3O 123 2.35% DWF4/CYP90B1 105 2.0% STR 102 1.95% F3'H/CYP75B 98 1.87% CSE 85 1.62% H6H 74 1.41% CAD 74 1.41% BR6OX2/CYP85A2 73 1.39% HCT 66 1.26% CAS 59 1.13% COMT 57 1.09% G8O/G8H 56 1.07% T16H 56 1.07% IO 52 0.99% LAC 51 0.97% F3'5'H/CYP75A 48 0.92% TAT 48 0.92% CYP90D1 48 0.92% TPS 48 0.92% GES 47 0.9% IFR 47 0.9% CYP71 46 0.88% SGD 44 0.84% SMT1/SMT2/SMT3 43 0.82% BBE 42 0.8% PYKS 41 0.78% TRI/TRII 40 0.76% FNS 40 0.76% RAS 39 0.74% GS 34 0.65% LAMT 34 0.65% PMT 33 0.63% 7DLH 31 0.59% F5H/CYP84A 31 0.59% NCS 30 0.57% PAL 30 0.57% BR6OX1/CYP85A1 30 0.57% CCR 29 0.55% SQE 28 0.53% ANR 27 0.51% ANS/LDOX 24 0.46% 16OMT 22 0.42% SLS 21 0.4% CPD/CYP90A1 19 0.36% 8HGO 18 0.34% DFR 16 0.31% ROT3/CYP90C1 16 0.31% CNMT 14 0.27% CYP719 14 0.27% CCoAOMT 14 0.27% SQS/FDFT1 14 0.27% FPPS 14 0.27% HPPR 12 0.23% GGPPS 12 0.23% AACT 11 0.21% COR 10 0.19% CHS 10 0.19% CPR 10 0.19% CYP51G1 10 0.19% MPO 9 0.17% CYP80B1 9 0.17% ISY 9 0.17% SMO1/SMO2 9 0.17% CHI 8 0.15% CMK/IspE 8 0.15% MCT/IspD 8 0.15% TYDC_DDC 7 0.13% MVK 7 0.13% DXS 7 0.13% TDC 6 0.11% 6OMT_4OMT_SOMT 6 0.11% HMGR 6 0.11% XMT_MXMT_DXMT 5 0.1% DET2 5 0.1% MVD 5 0.1% ADC 3 0.06% FK 3 0.06% PMK 3 0.06% DXR 3 0.06% HMGS 3 0.06% HDR/IspH 3 0.06% HDS/IspG 3 0.06% DWF7 2 0.04% CPI1 2 0.04% DWF1 2 0.04% HYD1 2 0.04% IDI 2 0.04% MDS/IspF 2 0.04% CYP80F1 1 0.02% ODC 1 0.02% FLS 1 0.02% DWF5 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 611 19 BAHD (213) View species results
Phenylpropanoid pathway 511 11 POD (208) View species results
Alkaloid pathway 445 25 7DLGT (78) View species results
Flavonoid pathway 258 13 UFGT (154) View species results
Rosmarinic acid pathway 171 7 4CL (42) View species results
Steroid pathway 125 13 CAS (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1808 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 390 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP80B1
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Gene Pathway Family Confidence Status Best Target
bretschneidera_sinensis_BsiG0007163.1 Alkaloid CYP80B1 medium borderline CYP80B1__00002__sp_O64900_C80B2_ESCCA
bretschneidera_sinensis_BsiG0008425.1 Alkaloid CYP80B1 medium borderline CYP80B1__00002__sp_O64900_C80B2_ESCCA
bretschneidera_sinensis_BsiG0020087.1 Alkaloid CYP80B1 medium pass CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
bretschneidera_sinensis_BsiG0021585.1 Alkaloid CYP80B1 medium borderline CYP80B1__00002__sp_O64900_C80B2_ESCCA
bretschneidera_sinensis_BsiG0027022.1 Alkaloid CYP80B1 low borderline CYP80B1__00001__sp_I3V6B1_C80BX_PAPSO
bretschneidera_sinensis_BsiG0032215.1 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
bretschneidera_sinensis_BsiG0033712.1 Alkaloid CYP80B1 medium borderline CYP80B1__00002__sp_O64900_C80B2_ESCCA
bretschneidera_sinensis_BsiG0034814.1 Alkaloid CYP80B1 medium borderline CYP80B1__00002__sp_O64900_C80B2_ESCCA
bretschneidera_sinensis_BsiG0036901.1 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA