PlantSME Plant secondary metabolism enzyme database

Bruguiera cylindrica (bruguiera_cylindrica)

Imported from atlas release summary for Bruguiera cylindrica.

1121
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.78% Alkaloid pathway 22.39% Phenylpropanoid pathway 18.91% Flavonoid pathway 14.54% Rosmarinic acid pathway 8.56% Steroid pathway 4.82%
Family Distribution
BAHD 6.58% C3'H/CYP98A 5.6% C4H 5.49% UGT 4.33% 7DLGT 4.01% UFGT 3.87% POD 3.77% CYP76 3.52%
Other Families 62.82%
More Families (95)
4CL 99 3.49% IFS 90 3.17% T3O 89 3.13% F3H 87 3.06% NMT 70 2.46% DWF4/CYP90B1 57 2.01% F3'H/CYP75B 52 1.83% CODM/T6ODM 50 1.76% STR 50 1.76% BR6OX2/CYP85A2 45 1.58% H6H 41 1.44% CAD 41 1.44% HCT 39 1.37% CYP71 37 1.3% IFR 36 1.27% SMT1/SMT2/SMT3 36 1.27% PMT 34 1.2% CYP90D1 33 1.16% TRI/TRII 31 1.09% CSE 31 1.09% LAC 31 1.09% CAS 31 1.09% PYKS 29 1.02% BBE 27 0.95% GS 26 0.92% TPS 25 0.88% GES 24 0.85% SGD 23 0.81% IO 22 0.77% ANR 22 0.77% TAT 22 0.77% T16H 20 0.7% F3'5'H/CYP75A 18 0.63% CCR 18 0.63% RAS 18 0.63% FNS 17 0.6% COMT 17 0.6% COR 16 0.56% G8O/G8H 16 0.56% F5H/CYP84A 16 0.56% 7DLH 15 0.53% PAL 15 0.53% CYP51G1 15 0.53% SLS 14 0.49% CPD/CYP90A1 13 0.46% NCS 12 0.42% 16OMT 11 0.39% LAMT 10 0.35% CYP80B1 9 0.32% 8HGO 9 0.32% CHS 9 0.32% DFR 9 0.32% ROT3/CYP90C1 9 0.32% BR6OX1/CYP85A1 9 0.32% ANS/LDOX 8 0.28% CPR 7 0.25% AACT 7 0.25% MPO 6 0.21% CNMT 6 0.21% GGPPS 6 0.21% FPPS 6 0.21% CYP719 5 0.18% CCoAOMT 5 0.18% SQS/FDFT1 5 0.18% DXS 5 0.18% MVD 5 0.18% TDC 4 0.14% HPPR 4 0.14% DET2 4 0.14% SMO1/SMO2 4 0.14% HDS/IspG 4 0.14% MVK 4 0.14% ADC 3 0.11% CHI 3 0.11% SQE 3 0.11% DWF7 3 0.11% HMGS 3 0.11% HMGR 3 0.11% ISY 2 0.07% TYDC_DDC 2 0.07% HYD1 2 0.07% DWF5 2 0.07% MCT/IspD 2 0.07% IDI 2 0.07% DXR 2 0.07% MDS/IspF 2 0.07% HDR/IspH 2 0.07% 6OMT_4OMT_SOMT 1 0.04% XMT_MXMT_DXMT 1 0.04% FLS 1 0.04% DWF1 1 0.04% FK 1 0.04% CPI1 1 0.04% CMK/IspE 1 0.04% PMK 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 345 20 BAHD (133) View species results
Alkaloid pathway 251 21 7DLGT (50) View species results
Phenylpropanoid pathway 212 11 POD (90) View species results
Flavonoid pathway 163 11 UFGT (101) View species results
Rosmarinic acid pathway 96 7 C4H (37) View species results
Steroid pathway 54 11 CAS (21) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 999 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
bruguiera_cylindrica_evm.model.Scaffold_11_RagTag.237 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
bruguiera_cylindrica_evm.model.Scaffold_11_RagTag.238 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
bruguiera_cylindrica_evm.model.Scaffold_1_RagTag.1792 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
bruguiera_cylindrica_evm.model.Scaffold_3_RagTag.1074 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
bruguiera_cylindrica_evm.model.Scaffold_4_RagTag.669 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
bruguiera_cylindrica_evm.model.Scaffold_6_RagTag.794 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.167 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.923 Flavonoid CHS medium pass CHS__00010__sp_Q9FEY5_CHSH1_HUMLU
bruguiera_cylindrica_evm.model.Scaffold_8_RagTag.1202 Flavonoid CHS low borderline CHS__00001__sp_A0A2Z5QL08_CHS_RHODA