Bruguiera cylindrica (bruguiera_cylindrica)
Imported from atlas release summary for Bruguiera cylindrica.
1121
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1121
Candidate Genes
BAHD
6.58%
C3'H/CYP98A
5.6%
C4H
5.49%
UGT
4.33%
7DLGT
4.01%
UFGT
3.87%
POD
3.77%
CYP76
3.52%
Other Families
62.82%
More Families (95)
4CL
99
3.49%
IFS
90
3.17%
T3O
89
3.13%
F3H
87
3.06%
NMT
70
2.46%
DWF4/CYP90B1
57
2.01%
F3'H/CYP75B
52
1.83%
CODM/T6ODM
50
1.76%
STR
50
1.76%
BR6OX2/CYP85A2
45
1.58%
H6H
41
1.44%
CAD
41
1.44%
HCT
39
1.37%
CYP71
37
1.3%
IFR
36
1.27%
SMT1/SMT2/SMT3
36
1.27%
PMT
34
1.2%
CYP90D1
33
1.16%
TRI/TRII
31
1.09%
CSE
31
1.09%
LAC
31
1.09%
CAS
31
1.09%
PYKS
29
1.02%
BBE
27
0.95%
GS
26
0.92%
TPS
25
0.88%
GES
24
0.85%
SGD
23
0.81%
IO
22
0.77%
ANR
22
0.77%
TAT
22
0.77%
T16H
20
0.7%
F3'5'H/CYP75A
18
0.63%
CCR
18
0.63%
RAS
18
0.63%
FNS
17
0.6%
COMT
17
0.6%
COR
16
0.56%
G8O/G8H
16
0.56%
F5H/CYP84A
16
0.56%
7DLH
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
SLS
14
0.49%
CPD/CYP90A1
13
0.46%
NCS
12
0.42%
16OMT
11
0.39%
LAMT
10
0.35%
CYP80B1
9
0.32%
8HGO
9
0.32%
CHS
9
0.32%
DFR
9
0.32%
ROT3/CYP90C1
9
0.32%
BR6OX1/CYP85A1
9
0.32%
ANS/LDOX
8
0.28%
CPR
7
0.25%
AACT
7
0.25%
MPO
6
0.21%
CNMT
6
0.21%
GGPPS
6
0.21%
FPPS
6
0.21%
CYP719
5
0.18%
CCoAOMT
5
0.18%
SQS/FDFT1
5
0.18%
DXS
5
0.18%
MVD
5
0.18%
TDC
4
0.14%
HPPR
4
0.14%
DET2
4
0.14%
SMO1/SMO2
4
0.14%
HDS/IspG
4
0.14%
MVK
4
0.14%
ADC
3
0.11%
CHI
3
0.11%
SQE
3
0.11%
DWF7
3
0.11%
HMGS
3
0.11%
HMGR
3
0.11%
ISY
2
0.07%
TYDC_DDC
2
0.07%
HYD1
2
0.07%
DWF5
2
0.07%
MCT/IspD
2
0.07%
IDI
2
0.07%
DXR
2
0.07%
MDS/IspF
2
0.07%
HDR/IspH
2
0.07%
6OMT_4OMT_SOMT
1
0.04%
XMT_MXMT_DXMT
1
0.04%
FLS
1
0.04%
DWF1
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
CMK/IspE
1
0.04%
PMK
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 345 | 20 | BAHD (133) | View species results |
| Alkaloid pathway | 251 | 21 | 7DLGT (50) | View species results |
| Phenylpropanoid pathway | 212 | 11 | POD (90) | View species results |
| Flavonoid pathway | 163 | 11 | UFGT (101) | View species results |
| Rosmarinic acid pathway | 96 | 7 | C4H (37) | View species results |
| Steroid pathway | 54 | 11 | CAS (21) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 999 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 244 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| bruguiera_cylindrica_evm.model.Scaffold_11_RagTag.1167 | Alkaloid | GS | medium | pass |
| bruguiera_cylindrica_evm.model.Scaffold_17_RagTag.206 | Alkaloid | GS | low | borderline |
| bruguiera_cylindrica_evm.model.Scaffold_18_RagTag.124 | Alkaloid | GS | low | borderline |
| bruguiera_cylindrica_evm.model.Scaffold_18_RagTag.267 | Alkaloid | GS | medium | pass |
| bruguiera_cylindrica_evm.model.Scaffold_1_RagTag.1693 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_2_RagTag.291 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_3_RagTag.1091 | Alkaloid | GS | low | borderline |
| bruguiera_cylindrica_evm.model.Scaffold_3_RagTag.879 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_3_RagTag.880 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_3_RagTag.883 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_3_RagTag.884 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_4_RagTag.131 | Alkaloid | GS | medium | pass |
| bruguiera_cylindrica_evm.model.Scaffold_4_RagTag.132 | Alkaloid | GS | medium | pass |
| bruguiera_cylindrica_evm.model.Scaffold_5_RagTag.1406 | Alkaloid | GS | low | borderline |
| bruguiera_cylindrica_evm.model.Scaffold_5_RagTag.144 | Alkaloid | GS | low | borderline |
| bruguiera_cylindrica_evm.model.Scaffold_6_RagTag.127 | Alkaloid | GS | low | borderline |
| bruguiera_cylindrica_evm.model.Scaffold_6_RagTag.128 | Alkaloid | GS | low | borderline |
| bruguiera_cylindrica_evm.model.Scaffold_6_RagTag.1377 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_6_RagTag.1484 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_6_RagTag.1509 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_6_RagTag.1611 | Alkaloid | GS | low | borderline |
| bruguiera_cylindrica_evm.model.Scaffold_8_RagTag.1024 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_8_RagTag.135 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_8_RagTag.136 | Alkaloid | GS | high | pass |
| bruguiera_cylindrica_evm.model.Scaffold_9_RagTag.1313 | Alkaloid | GS | low | borderline |
| bruguiera_cylindrica_evm.model.Scaffold_9_RagTag.1314 | Alkaloid | GS | low | borderline |