Bruguiera cylindrica (bruguiera_cylindrica)
Imported from atlas release summary for Bruguiera cylindrica.
1411
Candidate Protein Records
1121
Pathway-Level Records
2840
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2840
Family-Level Calls
BAHD
6.58%
C3'H/CYP98A
5.6%
C4H
5.49%
UGT
4.33%
7DLGT
4.01%
UFGT
3.87%
POD
3.77%
CYP76
3.52%
Other Families
62.82%
More Families (95)
4CL
99
3.49%
IFS
90
3.17%
T3O
89
3.13%
F3H
87
3.06%
NMT
70
2.46%
DWF4/CYP90B1
57
2.01%
F3'H/CYP75B
52
1.83%
CODM/T6ODM
50
1.76%
STR
50
1.76%
BR6OX2/CYP85A2
45
1.58%
H6H
41
1.44%
CAD
41
1.44%
HCT
39
1.37%
CYP71
37
1.3%
IFR
36
1.27%
SMT1/SMT2/SMT3
36
1.27%
PMT
34
1.2%
CYP90D1
33
1.16%
TRI/TRII
31
1.09%
CSE
31
1.09%
LAC
31
1.09%
CAS
31
1.09%
PYKS
29
1.02%
BBE
27
0.95%
GS
26
0.92%
TPS
25
0.88%
GES
24
0.85%
SGD
23
0.81%
IO
22
0.77%
ANR
22
0.77%
TAT
22
0.77%
T16H
20
0.7%
F3'5'H/CYP75A
18
0.63%
CCR
18
0.63%
RAS
18
0.63%
FNS
17
0.6%
COMT
17
0.6%
COR
16
0.56%
G8O/G8H
16
0.56%
F5H/CYP84A
16
0.56%
7DLH
15
0.53%
PAL
15
0.53%
CYP51G1
15
0.53%
SLS
14
0.49%
CPD/CYP90A1
13
0.46%
NCS
12
0.42%
16OMT
11
0.39%
LAMT
10
0.35%
CYP80B1
9
0.32%
8HGO
9
0.32%
CHS
9
0.32%
DFR
9
0.32%
ROT3/CYP90C1
9
0.32%
BR6OX1/CYP85A1
9
0.32%
ANS/LDOX
8
0.28%
CPR
7
0.25%
AACT
7
0.25%
MPO
6
0.21%
CNMT
6
0.21%
GGPPS
6
0.21%
FPPS
6
0.21%
CYP719
5
0.18%
CCoAOMT
5
0.18%
SQS/FDFT1
5
0.18%
DXS
5
0.18%
MVD
5
0.18%
TDC
4
0.14%
HPPR
4
0.14%
DET2
4
0.14%
SMO1/SMO2
4
0.14%
HDS/IspG
4
0.14%
MVK
4
0.14%
ADC
3
0.11%
CHI
3
0.11%
SQE
3
0.11%
DWF7
3
0.11%
HMGS
3
0.11%
HMGR
3
0.11%
ISY
2
0.07%
TYDC_DDC
2
0.07%
HYD1
2
0.07%
DWF5
2
0.07%
MCT/IspD
2
0.07%
IDI
2
0.07%
DXR
2
0.07%
MDS/IspF
2
0.07%
HDR/IspH
2
0.07%
6OMT_4OMT_SOMT
1
0.04%
XMT_MXMT_DXMT
1
0.04%
FLS
1
0.04%
DWF1
1
0.04%
FK
1
0.04%
CPI1
1
0.04%
CMK/IspE
1
0.04%
PMK
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 345 | 20 | BAHD (133) | View species results |
| Alkaloid pathway | 251 | 21 | 7DLGT (50) | View species results |
| Phenylpropanoid pathway | 212 | 11 | POD (90) | View species results |
| Flavonoid pathway | 163 | 11 | UFGT (101) | View species results |
| Rosmarinic acid pathway | 96 | 7 | C4H (37) | View species results |
| Steroid pathway | 54 | 11 | CAS (21) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 999 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 244 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| bruguiera_cylindrica_evm.model.Scaffold_6_RagTag.892 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.1216 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.1325 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.1326 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.243 | Alkaloid | NMT | low | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.290 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.321 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.377 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.889 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.95 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_7_RagTag.975 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_8_RagTag.1118 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_8_RagTag.1272 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_8_RagTag.173 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| bruguiera_cylindrica_evm.model.Scaffold_8_RagTag.400 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_8_RagTag.542 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| bruguiera_cylindrica_evm.model.Scaffold_9_RagTag.1135 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_9_RagTag.1141 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_9_RagTag.539 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| bruguiera_cylindrica_evm.model.Scaffold_9_RagTag.659 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |