PlantSME Plant secondary metabolism enzyme database

Calohypnum plumiforme (calohypnum_plumiforme)

Imported from atlas release summary for Calohypnum plumiforme.

524
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Alkaloid pathway 27.1% Terpenoid pathway 20.42% Phenylpropanoid pathway 19.66% Flavonoid pathway 16.79% Steroid pathway 8.4% Rosmarinic acid pathway 7.63%
Family Distribution
4CL 7.99% BAHD 6.13% NMT 4.46% C3'H/CYP98A 4.4% PAL 3.6% C4H 3.53% T3O 3.0% IFR 2.86%
Other Families 64.02%
More Families (97)
IFS 41 2.73% PYKS 37 2.47% GS 37 2.47% F3H 37 2.47% POD 37 2.47% TRI/TRII 33 2.2% STR 32 2.13% UGT 30 2.0% CHS 28 1.87% UFGT 27 1.8% CODM/T6ODM 26 1.73% 7DLGT 26 1.73% CAD 26 1.73% CAS 26 1.73% DWF4/CYP90B1 26 1.73% SMT1/SMT2/SMT3 21 1.4% CYP71 20 1.33% F3'H/CYP75B 18 1.2% CYP76 18 1.2% 7DLH 17 1.13% COMT 17 1.13% CYP90D1 16 1.07% BR6OX2/CYP85A2 15 1.0% LAMT 14 0.93% H6H 13 0.87% ANR 13 0.87% CSE 12 0.8% NCS 11 0.73% 8HGO 11 0.73% 16OMT 11 0.73% HCT 11 0.73% SGD 10 0.67% CNMT 9 0.6% LAC 9 0.6% RAS 9 0.6% CPD/CYP90A1 9 0.6% TPS 9 0.6% TDC 8 0.53% IO 8 0.53% FNS 8 0.53% AACT 8 0.53% GES 7 0.47% GGPPS 7 0.47% G8O/G8H 6 0.4% SLS 6 0.4% COR 6 0.4% TAT 6 0.4% ROT3/CYP90C1 6 0.4% PMT 5 0.33% DFR 5 0.33% CCR 5 0.33% CPR 5 0.33% CYP51G1 5 0.33% CYP80B1 4 0.27% BBE 4 0.27% F3'5'H/CYP75A 4 0.27% DWF5 4 0.27% SQS/FDFT1 4 0.27% HDS/IspG 4 0.27% CYP80F1 3 0.2% MPO 3 0.2% ANS/LDOX 3 0.2% F5H/CYP84A 3 0.2% DET2 3 0.2% CPI1 3 0.2% MDS/IspF 3 0.2% MVK 3 0.2% FPPS 3 0.2% T16H 2 0.13% TYDC_DDC 2 0.13% XMT_MXMT_DXMT 2 0.13% ADC 2 0.13% 6OMT_4OMT_SOMT 2 0.13% CYP719 2 0.13% FLS 2 0.13% CHI 2 0.13% DWF1 2 0.13% SQE 2 0.13% BR6OX1/CYP85A1 2 0.13% SMO1/SMO2 2 0.13% HYD1 2 0.13% MVD 2 0.13% CMK/IspE 2 0.13% HDR/IspH 2 0.13% PMK 2 0.13% MCT/IspD 2 0.13% ISY 1 0.07% CCoAOMT 1 0.07% HPPR 1 0.07% DWF7 1 0.07% FK 1 0.07% HMGR 1 0.07% GPPS 1 0.07% DXR 1 0.07% DXS 1 0.07% IDI 1 0.07% HMGS 1 0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Alkaloid pathway 142 17 NMT (27) View species results
Terpenoid pathway 107 18 BAHD (48) View species results
Phenylpropanoid pathway 103 9 POD (30) View species results
Flavonoid pathway 88 9 CHS (26) View species results
Steroid pathway 44 13 CAS (18) View species results
Rosmarinic acid pathway 40 7 PAL (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 395 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 112 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
CpluGWHAMMO000002980126240.1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
CpluGWHAMMO000005780217550.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
CpluGWHAMMO000006210228790.1 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
CpluGWHAMMO000008690275810.1 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
CpluGWHAMMO000008840277050.1 Phenylpropanoid CCR low borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH