Calohypnum plumiforme (calohypnum_plumiforme)
Imported from atlas release summary for Calohypnum plumiforme.
524
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
524
Candidate Genes
4CL
7.99%
BAHD
6.13%
NMT
4.46%
C3'H/CYP98A
4.4%
PAL
3.6%
C4H
3.53%
T3O
3.0%
IFR
2.86%
Other Families
64.02%
More Families (97)
IFS
41
2.73%
PYKS
37
2.47%
GS
37
2.47%
F3H
37
2.47%
POD
37
2.47%
TRI/TRII
33
2.2%
STR
32
2.13%
UGT
30
2.0%
CHS
28
1.87%
UFGT
27
1.8%
CODM/T6ODM
26
1.73%
7DLGT
26
1.73%
CAD
26
1.73%
CAS
26
1.73%
DWF4/CYP90B1
26
1.73%
SMT1/SMT2/SMT3
21
1.4%
CYP71
20
1.33%
F3'H/CYP75B
18
1.2%
CYP76
18
1.2%
7DLH
17
1.13%
COMT
17
1.13%
CYP90D1
16
1.07%
BR6OX2/CYP85A2
15
1.0%
LAMT
14
0.93%
H6H
13
0.87%
ANR
13
0.87%
CSE
12
0.8%
NCS
11
0.73%
8HGO
11
0.73%
16OMT
11
0.73%
HCT
11
0.73%
SGD
10
0.67%
CNMT
9
0.6%
LAC
9
0.6%
RAS
9
0.6%
CPD/CYP90A1
9
0.6%
TPS
9
0.6%
TDC
8
0.53%
IO
8
0.53%
FNS
8
0.53%
AACT
8
0.53%
GES
7
0.47%
GGPPS
7
0.47%
G8O/G8H
6
0.4%
SLS
6
0.4%
COR
6
0.4%
TAT
6
0.4%
ROT3/CYP90C1
6
0.4%
PMT
5
0.33%
DFR
5
0.33%
CCR
5
0.33%
CPR
5
0.33%
CYP51G1
5
0.33%
CYP80B1
4
0.27%
BBE
4
0.27%
F3'5'H/CYP75A
4
0.27%
DWF5
4
0.27%
SQS/FDFT1
4
0.27%
HDS/IspG
4
0.27%
CYP80F1
3
0.2%
MPO
3
0.2%
ANS/LDOX
3
0.2%
F5H/CYP84A
3
0.2%
DET2
3
0.2%
CPI1
3
0.2%
MDS/IspF
3
0.2%
MVK
3
0.2%
FPPS
3
0.2%
T16H
2
0.13%
TYDC_DDC
2
0.13%
XMT_MXMT_DXMT
2
0.13%
ADC
2
0.13%
6OMT_4OMT_SOMT
2
0.13%
CYP719
2
0.13%
FLS
2
0.13%
CHI
2
0.13%
DWF1
2
0.13%
SQE
2
0.13%
BR6OX1/CYP85A1
2
0.13%
SMO1/SMO2
2
0.13%
HYD1
2
0.13%
MVD
2
0.13%
CMK/IspE
2
0.13%
HDR/IspH
2
0.13%
PMK
2
0.13%
MCT/IspD
2
0.13%
ISY
1
0.07%
CCoAOMT
1
0.07%
HPPR
1
0.07%
DWF7
1
0.07%
FK
1
0.07%
HMGR
1
0.07%
GPPS
1
0.07%
DXR
1
0.07%
DXS
1
0.07%
IDI
1
0.07%
HMGS
1
0.07%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Alkaloid pathway | 142 | 17 | NMT (27) | View species results |
| Terpenoid pathway | 107 | 18 | BAHD (48) | View species results |
| Phenylpropanoid pathway | 103 | 9 | POD (30) | View species results |
| Flavonoid pathway | 88 | 9 | CHS (26) | View species results |
| Steroid pathway | 44 | 13 | CAS (18) | View species results |
| Rosmarinic acid pathway | 40 | 7 | PAL (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 395 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 112 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CpluGWHAMMO000000420003080.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| CpluGWHAMMO000000420003090.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| CpluGWHAMMO000001160037200.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CpluGWHAMMO000001840073660.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| CpluGWHAMMO000001840073690.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| CpluGWHAMMO000002230092770.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| CpluGWHAMMO000002440102760.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| CpluGWHAMMO000002850118830.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| CpluGWHAMMO000003220135530.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| CpluGWHAMMO000004850189000.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CpluGWHAMMO000004900192040.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CpluGWHAMMO000004900192050.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CpluGWHAMMO000004950193680.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CpluGWHAMMO000005060197180.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CpluGWHAMMO000005400207500.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CpluGWHAMMO000008920278420.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CpluGWHAMMO000009600292180.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CpluGWHAMMO000009620293030.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CpluGWHAMMO000009620293080.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CpluGWHAMMO000009620293260.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| CpluGWHAMMO000009620293460.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| CpluGWHAMMO000009620293500.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CpluGWHAMMO000009620293560.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CpluGWHAMMO000009620293620.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CpluGWHAMMO000009620293630.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CpluGWHAMMO000009620294300.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| CpluGWHAMMO000009620294390.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| CpluGWHAMMO000009620294440.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| CpluGWHAMMO000009620294490.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CpluGWHAMMO000009620294640.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| CpluGWHAMMO000009620294920.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| CpluGWHAMMO000009620295060.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| CpluGWHAMMO000010340300460.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |