PlantSME Plant secondary metabolism enzyme database

Camellia sinensis (camellia_sinensis)

Imported from atlas release summary for Camellia sinensis.

2616
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.77% Alkaloid pathway 21.75% Phenylpropanoid pathway 16.9% Flavonoid pathway 15.18% Rosmarinic acid pathway 8.3% Steroid pathway 6.12%
Family Distribution
UGT 6.02% BAHD 5.93% C3'H/CYP98A 5.61% C4H 5.35% 7DLGT 5.29% UFGT 5.24% IFS 3.47% CYP76 3.42%
Other Families 59.67%
More Families (98)
T3O 191 3.1% F3H 179 2.9% POD 179 2.9% 4CL 174 2.82% NMT 134 2.17% DWF4/CYP90B1 134 2.17% CAD 130 2.11% F3'H/CYP75B 118 1.91% BR6OX2/CYP85A2 98 1.59% H6H 95 1.54% SMT1/SMT2/SMT3 94 1.52% CAS 91 1.48% CODM/T6ODM 88 1.43% TPS 78 1.26% STR 77 1.25% HCT 77 1.25% GES 76 1.23% LAC 70 1.14% TAT 70 1.14% GS 60 0.97% CSE 54 0.88% ANR 53 0.86% CYP90D1 50 0.81% G8O/G8H 49 0.79% PMT 48 0.78% IFR 47 0.76% CYP71 47 0.76% RAS 46 0.75% TRI/TRII 45 0.73% COMT 41 0.66% NCS 39 0.63% CCR 39 0.63% F3'5'H/CYP75A 38 0.62% 7DLH 37 0.6% PYKS 36 0.58% T16H 35 0.57% SLS 35 0.57% IO 34 0.55% CPD/CYP90A1 34 0.55% SGD 32 0.52% FNS 32 0.52% BR6OX1/CYP85A1 31 0.5% SQE 29 0.47% LAMT 27 0.44% CYP51G1 26 0.42% 16OMT 25 0.41% CPR 25 0.41% CYP719 23 0.37% COR 23 0.37% DFR 23 0.37% F5H/CYP84A 21 0.34% BBE 19 0.31% ROT3/CYP90C1 19 0.31% 8HGO 18 0.29% PAL 18 0.29% MCT/IspD 17 0.28% ANS/LDOX 16 0.26% HMGR 16 0.26% CHS 12 0.19% AACT 12 0.19% CNMT 11 0.18% CCoAOMT 11 0.18% MPO 10 0.16% TDC 9 0.15% DXS 9 0.15% GGPPS 9 0.15% FPPS 9 0.15% TYDC_DDC 8 0.13% HMGS 8 0.13% CYP80B1 7 0.11% CHI 7 0.11% HPPR 7 0.11% PMK 7 0.11% 6OMT_4OMT_SOMT 6 0.1% DET2 6 0.1% MVK 6 0.1% ADC 5 0.08% ISY 5 0.08% SQS/FDFT1 5 0.08% SMO1/SMO2 5 0.08% MVD 5 0.08% MDS/IspF 5 0.08% ODC 4 0.06% HYD1 4 0.06% DWF1 3 0.05% DXR 3 0.05% CMK/IspE 3 0.05% XMT_MXMT_DXMT 2 0.03% CYP80F1 2 0.03% FLS 2 0.03% DWF7 2 0.03% CPI1 2 0.03% FK 2 0.03% IDI 2 0.03% HDS/IspG 2 0.03% DWF5 1 0.02% GPPS 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 831 20 UGT (352) View species results
Alkaloid pathway 569 26 7DLGT (158) View species results
Phenylpropanoid pathway 442 11 POD (155) View species results
Flavonoid pathway 397 12 UFGT (295) View species results
Rosmarinic acid pathway 217 7 C4H (83) View species results
Steroid pathway 160 13 CAS (65) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2130 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 489 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status
camellia_sinensis_GWHPASIV003728 Alkaloid TYDC_DDC low borderline
camellia_sinensis_GWHPASIV004411 Alkaloid TYDC_DDC medium borderline
camellia_sinensis_GWHPASIV004412 Alkaloid TYDC_DDC medium borderline
camellia_sinensis_GWHPASIV022823 Alkaloid TYDC_DDC medium borderline
camellia_sinensis_GWHPASIV026348 Alkaloid TYDC_DDC low borderline
camellia_sinensis_GWHPASIV031606 Alkaloid TYDC_DDC low borderline
camellia_sinensis_GWHPASIV039584 Alkaloid TYDC_DDC medium borderline
camellia_sinensis_GWHPASIV045544 Alkaloid TYDC_DDC medium borderline