PlantSME Plant secondary metabolism enzyme database

Capsella rubella (capsella_rubella)

Imported from atlas release summary for Capsella rubella.

1696
Candidate Protein Records
1403
Pathway-Level Records
3498
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 426 19 BAHD (176) View species results
Alkaloid pathway 318 18 7DLGT (51) View species results
Phenylpropanoid pathway 291 11 POD (131) View species results
Flavonoid pathway 171 7 UFGT (118) View species results
Rosmarinic acid pathway 108 7 C4H (44) View species results
Steroid pathway 89 12 SMT1/SMT2/SMT3 (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1385 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 263 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Crubscaffold_10026480.1 Flavonoid F3H low borderline
Crubscaffold_10028270.1 Flavonoid F3H medium borderline
Crubscaffold_10032850.1 Flavonoid F3H low borderline
Crubscaffold_10035000.1 Flavonoid F3H medium borderline
Crubscaffold_10038560.1 Flavonoid F3H medium borderline
Crubscaffold_10038570.1 Flavonoid F3H medium borderline
Crubscaffold_10041880.1 Flavonoid F3H low borderline
Crubscaffold_10041890.1 Flavonoid F3H low borderline
Crubscaffold_10041900.1 Flavonoid F3H low borderline
Crubscaffold_10041910.1 Flavonoid F3H low borderline
Crubscaffold_10041920.1 Flavonoid F3H low borderline
Crubscaffold_10041930.1 Flavonoid F3H low borderline
Crubscaffold_20049170.1 Flavonoid F3H medium borderline
Crubscaffold_20053480.1 Flavonoid F3H medium borderline
Crubscaffold_20059310.1 Flavonoid F3H medium pass
Crubscaffold_20070780.1 Flavonoid F3H medium borderline
Crubscaffold_20071970.1 Flavonoid F3H medium borderline
Crubscaffold_20073800.1 Flavonoid F3H medium borderline
Crubscaffold_20073810.1 Flavonoid F3H medium pass
Crubscaffold_30085900.1 Flavonoid F3H medium borderline
Crubscaffold_30087660.1 Flavonoid F3H medium borderline
Crubscaffold_30088470.1 Flavonoid F3H medium borderline
Crubscaffold_30092350.1 Flavonoid F3H low borderline
Crubscaffold_30094210.1 Flavonoid F3H medium borderline
Crubscaffold_30094220.1 Flavonoid F3H medium borderline
Crubscaffold_30094230.1 Flavonoid F3H medium borderline
Crubscaffold_30094240.1 Flavonoid F3H medium borderline
Crubscaffold_30094240.2 Flavonoid F3H medium borderline
Crubscaffold_30096850.1 Flavonoid F3H medium borderline
Crubscaffold_30106330.1 Flavonoid F3H medium borderline
Crubscaffold_30109280.1 Flavonoid F3H medium borderline
Crubscaffold_3560111250.1 Flavonoid F3H low borderline
Crubscaffold_40118560.1 Flavonoid F3H medium borderline
Crubscaffold_40123320.1 Flavonoid F3H medium borderline
Crubscaffold_40123330.1 Flavonoid F3H medium borderline
Crubscaffold_40129790.1 Flavonoid F3H medium borderline
Crubscaffold_40130420.1 Flavonoid F3H medium borderline
Crubscaffold_40131480.1 Flavonoid F3H medium borderline
Crubscaffold_40138650.1 Flavonoid F3H medium borderline
Crubscaffold_50154670.1 Flavonoid F3H low borderline
Crubscaffold_50154680.1 Flavonoid F3H low borderline
Crubscaffold_50155170.1 Flavonoid F3H low borderline
Crubscaffold_50158350.1 Flavonoid F3H low borderline
Crubscaffold_50158360.1 Flavonoid F3H low borderline
Crubscaffold_50158930.1 Flavonoid F3H low borderline
Crubscaffold_50160010.1 Flavonoid F3H medium borderline
Crubscaffold_50165110.1 Flavonoid F3H medium borderline
Crubscaffold_50169430.1 Flavonoid F3H medium borderline
Crubscaffold_50170470.1 Flavonoid F3H medium borderline
Crubscaffold_60177240.1 Flavonoid F3H medium borderline