PlantSME Plant secondary metabolism enzyme database

Capsella rubella (capsella_rubella)

Imported from atlas release summary for Capsella rubella.

1696
Candidate Protein Records
1403
Pathway-Level Records
3498
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 426 19 BAHD (176) View species results
Alkaloid pathway 318 18 7DLGT (51) View species results
Phenylpropanoid pathway 291 11 POD (131) View species results
Flavonoid pathway 171 7 UFGT (118) View species results
Rosmarinic acid pathway 108 7 C4H (44) View species results
Steroid pathway 89 12 SMT1/SMT2/SMT3 (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1385 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 263 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Crubscaffold_60178870.1 Flavonoid F3H medium borderline
Crubscaffold_60179210.1 Flavonoid F3H medium borderline
Crubscaffold_60180370.1 Flavonoid F3H medium borderline
Crubscaffold_60183530.1 Flavonoid F3H medium borderline
Crubscaffold_60191520.1 Flavonoid F3H medium borderline
Crubscaffold_60191610.1 Flavonoid F3H medium borderline
Crubscaffold_60195090.1 Flavonoid F3H medium borderline
Crubscaffold_60201950.1 Flavonoid F3H medium borderline
Crubscaffold_60201970.1 Flavonoid F3H medium borderline
Crubscaffold_60206740.1 Flavonoid F3H low borderline
Crubscaffold_60206750.1 Flavonoid F3H low borderline
Crubscaffold_70225610.1 Flavonoid F3H medium borderline
Crubscaffold_70225730.1 Flavonoid F3H medium borderline
Crubscaffold_70227840.1 Flavonoid F3H medium borderline
Crubscaffold_70228420.1 Flavonoid F3H medium borderline
Crubscaffold_70229740.1 Flavonoid F3H medium borderline
Crubscaffold_70230240.1 Flavonoid F3H medium borderline
Crubscaffold_70234610.1 Flavonoid F3H low borderline
Crubscaffold_70234620.1 Flavonoid F3H low borderline
Crubscaffold_70235230.1 Flavonoid F3H medium borderline
Crubscaffold_70243090.1 Flavonoid F3H medium borderline
Crubscaffold_80248290.1 Flavonoid F3H low borderline
Crubscaffold_80252660.1 Flavonoid F3H medium borderline
Crubscaffold_80252670.1 Flavonoid F3H medium borderline
Crubscaffold_80252680.1 Flavonoid F3H medium borderline
Crubscaffold_80253180.1 Flavonoid F3H medium borderline
Crubscaffold_80253180.2 Flavonoid F3H medium borderline
Crubscaffold_80253190.1 Flavonoid F3H medium borderline
Crubscaffold_80259380.1 Flavonoid F3H low borderline
Crubscaffold_80259870.1 Flavonoid F3H medium borderline
Crubscaffold_80262340.1 Flavonoid F3H medium borderline
Crubscaffold_80268250.1 Flavonoid F3H medium borderline
Crubscaffold_80268260.1 Flavonoid F3H medium borderline
Crubscaffold_80270900.1 Flavonoid F3H medium borderline
Crubscaffold_80272350.1 Flavonoid F3H medium borderline
Crubscaffold_80272360.1 Flavonoid F3H medium borderline
Crubscaffold_80272370.1 Flavonoid F3H medium borderline
Crubscaffold_80272380.1 Flavonoid F3H medium borderline
Crubscaffold_80272390.1 Flavonoid F3H medium borderline
Crubscaffold_80272400.1 Flavonoid F3H medium borderline
Crubscaffold_80267320.1 Flavonoid FLS medium borderline
Crubscaffold_10011320.1 Flavonoid FNS medium borderline
Crubscaffold_10030100.1 Flavonoid FNS medium borderline
Crubscaffold_1300045610.1 Flavonoid FNS medium borderline
Crubscaffold_30078010.1 Flavonoid FNS medium borderline
Crubscaffold_30078950.1 Flavonoid FNS low borderline
Crubscaffold_40117300.1 Flavonoid FNS medium borderline
Crubscaffold_40136570.1 Flavonoid FNS medium borderline
Crubscaffold_40140650.1 Flavonoid FNS medium borderline
Crubscaffold_40140960.1 Flavonoid FNS medium borderline