Capsicum chinense (capsicum_chinense)
Imported from atlas release summary for Capsicum chinense.
1660
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1660
Candidate Genes
C4H
8.03%
C3'H/CYP98A
7.17%
CYP76
4.66%
T3O
4.39%
IFS
4.39%
BAHD
4.29%
4CL
3.77%
POD
3.27%
Other Families
60.03%
More Families (98)
F3H
160
3.09%
F3'H/CYP75B
149
2.88%
DWF4/CYP90B1
149
2.88%
BR6OX2/CYP85A2
137
2.65%
NMT
104
2.01%
H6H
96
1.86%
UGT
96
1.86%
CYP71
94
1.82%
TPS
90
1.74%
STR
87
1.68%
CODM/T6ODM
84
1.62%
GES
79
1.53%
CAD
71
1.37%
COMT
71
1.37%
T16H
68
1.32%
7DLGT
66
1.28%
SMT1/SMT2/SMT3
65
1.26%
CYP90D1
55
1.06%
TRI/TRII
52
1.01%
IO
52
1.01%
UFGT
52
1.01%
F5H/CYP84A
52
1.01%
16OMT
48
0.93%
BBE
46
0.89%
G8O/G8H
45
0.87%
LAC
45
0.87%
TAT
45
0.87%
7DLH
42
0.81%
FNS
42
0.81%
CAS
42
0.81%
CSE
41
0.79%
PYKS
40
0.77%
F3'5'H/CYP75A
39
0.75%
GS
35
0.68%
SLS
34
0.66%
CYP51G1
32
0.62%
IFR
29
0.56%
SGD
27
0.52%
CPD/CYP90A1
26
0.5%
BR6OX1/CYP85A1
26
0.5%
PAL
24
0.46%
NCS
21
0.41%
CCR
21
0.41%
LAMT
20
0.39%
8HGO
20
0.39%
ANR
20
0.39%
6OMT_4OMT_SOMT
15
0.29%
ANS/LDOX
15
0.29%
CHS
15
0.29%
FPPS
15
0.29%
PMT
13
0.25%
CYP80B1
13
0.25%
CNMT
13
0.25%
DFR
13
0.25%
HCT
13
0.25%
RAS
13
0.25%
TYDC_DDC
12
0.23%
HPPR
12
0.23%
XMT_MXMT_DXMT
11
0.21%
MPO
11
0.21%
CPR
11
0.21%
AACT
11
0.21%
COR
10
0.19%
CCoAOMT
10
0.19%
GGPPS
10
0.19%
ISY
9
0.17%
SQS/FDFT1
9
0.17%
HMGR
9
0.17%
ROT3/CYP90C1
8
0.15%
CYP719
7
0.14%
DET2
7
0.14%
ODC
6
0.12%
SMO1/SMO2
6
0.12%
SQE
6
0.12%
HDR/IspH
5
0.1%
HMGS
5
0.1%
FLS
4
0.08%
MVD
4
0.08%
PMK
4
0.08%
TDC
3
0.06%
CHI
3
0.06%
DWF1
3
0.06%
HYD1
3
0.06%
DXS
3
0.06%
IDI
3
0.06%
GPPS
3
0.06%
ADC
2
0.04%
DWF5
2
0.04%
MDS/IspF
2
0.04%
MCT/IspD
2
0.04%
CMK/IspE
2
0.04%
MVK
2
0.04%
HDS/IspG
2
0.04%
CYP80F1
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 475 | 21 | BAHD (169) | View species results |
| Phenylpropanoid pathway | 395 | 12 | POD (153) | View species results |
| Alkaloid pathway | 376 | 28 | GES (67) | View species results |
| Rosmarinic acid pathway | 190 | 7 | C4H (91) | View species results |
| Flavonoid pathway | 125 | 11 | 4CL (39) | View species results |
| Steroid pathway | 99 | 12 | SMT1/SMT2/SMT3 (45) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2510 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 248 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CAchiCCv1.2.scaffold10250007220.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold1100018620.1 | Phenylpropanoid | CAD | medium | pass | CAD__00009__sp_P42734_CADH9_ARATH |
| CAchiCCv1.2.scaffold11550028330.1 | Phenylpropanoid | CAD | medium | pass | CAD__00009__sp_P42734_CADH9_ARATH |
| CAchiCCv1.2.scaffold13110050880.1 | Phenylpropanoid | CAD | medium | pass | CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE |
| CAchiCCv1.2.scaffold13110050890.1 | Phenylpropanoid | CAD | medium | pass | CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE |
| CAchiCCv1.2.scaffold13110050910.1 | Phenylpropanoid | CAD | medium | pass | CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE |
| CAchiCCv1.2.scaffold13110050920.1 | Phenylpropanoid | CAD | medium | pass | CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE |
| CAchiCCv1.2.scaffold13110050930.1 | Phenylpropanoid | CAD | medium | pass | CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE |
| CAchiCCv1.2.scaffold13110050940.1 | Phenylpropanoid | CAD | medium | pass | CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE |
| CAchiCCv1.2.scaffold13110050960.1 | Phenylpropanoid | CAD | medium | pass | CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE |
| CAchiCCv1.2.scaffold13110050970.1 | Phenylpropanoid | CAD | medium | pass | CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE |
| CAchiCCv1.2.scaffold1370056130.1 | Phenylpropanoid | CAD | medium | pass | CAD__00016__sp_Q9SJ10_CADH3_ARATH |
| CAchiCCv1.2.scaffold1370056160.1 | Phenylpropanoid | CAD | medium | pass | CAD__00009__sp_P42734_CADH9_ARATH |
| CAchiCCv1.2.scaffold14250061340.1 | Phenylpropanoid | CAD | medium | borderline | CAD__00005__sp_G7IYC1_CAD2_MEDTR |
| CAchiCCv1.2.scaffold14510063660.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold14910067270.1 | Phenylpropanoid | CAD | low | borderline | CAD__00012__sp_Q02972_CADH8_ARATH |
| CAchiCCv1.2.scaffold150067880.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold150067890.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold1560074110.1 | Phenylpropanoid | CAD | medium | pass | CAD__00013__sp_Q0JA75_CADH7_ORYSJ |
| CAchiCCv1.2.scaffold16750084880.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold178850090680.1 | Phenylpropanoid | CAD | medium | pass | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold190096940.1 | Phenylpropanoid | CAD | medium | borderline | CAD__00005__sp_G7IYC1_CAD2_MEDTR |
| CAchiCCv1.2.scaffold20890107500.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold2200111240.1 | Phenylpropanoid | CAD | medium | pass | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold2200111260.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold2200111380.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold2200111410.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold2200111460.1 | Phenylpropanoid | CAD | medium | pass | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold2200111480.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold2500125880.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold260128600.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold260128610.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold2710137120.1 | Phenylpropanoid | CAD | medium | borderline | CAD__00005__sp_G7IYC1_CAD2_MEDTR |
| CAchiCCv1.2.scaffold2990146020.1 | Phenylpropanoid | CAD | low | borderline | CAD__00011__sp_Q02971_CADH7_ARATH |
| CAchiCCv1.2.scaffold3050148570.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold320154580.1 | Phenylpropanoid | CAD | low | borderline | CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR |
| CAchiCCv1.2.scaffold3310157210.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold3480161480.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold3500163080.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold3500163110.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold3840176110.1 | Phenylpropanoid | CAD | low | borderline | CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO |
| CAchiCCv1.2.scaffold4130188230.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold4220192300.1 | Phenylpropanoid | CAD | medium | borderline | CAD__00005__sp_G7IYC1_CAD2_MEDTR |
| CAchiCCv1.2.scaffold4220192310.1 | Phenylpropanoid | CAD | medium | borderline | CAD__00005__sp_G7IYC1_CAD2_MEDTR |
| CAchiCCv1.2.scaffold4220192320.1 | Phenylpropanoid | CAD | medium | borderline | CAD__00005__sp_G7IYC1_CAD2_MEDTR |
| CAchiCCv1.2.scaffold440197920.1 | Phenylpropanoid | CAD | low | borderline | CAD__00004__sp_B5LAT8_CAD1_CAPAN |
| CAchiCCv1.2.scaffold4790211510.1 | Phenylpropanoid | CAD | medium | pass | CAD__00004__sp_B5LAT8_CAD1_CAPAN |
| CAchiCCv1.2.scaffold480212420.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold5250226430.1 | Phenylpropanoid | CAD | low | borderline | CAD__00006__sp_I1ZHA5_CAD_CHAFM |
| CAchiCCv1.2.scaffold5790242840.1 | Phenylpropanoid | CAD | low | borderline | CAD__00011__sp_Q02971_CADH7_ARATH |