PlantSME Plant secondary metabolism enzyme database

Cardamine hirsuta (cardamine_hirsuta)

Imported from atlas release summary for Cardamine hirsuta.

2106
Candidate Protein Records
1757
Pathway-Level Records
4167
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 31.64% Alkaloid pathway 23.68% Phenylpropanoid pathway 18.21% Flavonoid pathway 10.81% Steroid pathway 8.14% Rosmarinic acid pathway 7.51%
Family Distribution
BAHD 6.96% C4H 6.07% C3'H/CYP98A 5.81% IFS 4.15% CYP76 3.72% UGT 3.6% 4CL 3.53% POD 3.48%
Other Families 62.68%
More Families (95)
NMT 140 3.36% T3O 135 3.24% UFGT 134 3.22% 7DLGT 132 3.17% F3H 114 2.74% BR6OX2/CYP85A2 94 2.26% DWF4/CYP90B1 93 2.23% SMT1/SMT2/SMT3 78 1.87% SGD 71 1.7% CODM/T6ODM 69 1.66% STR 66 1.58% CAS 64 1.54% CYP71 60 1.44% TRI/TRII 57 1.37% TPS 57 1.37% H6H 56 1.34% F3'H/CYP75B 55 1.32% GES 52 1.25% CSE 49 1.18% CAD 47 1.13% T16H 41 0.98% IFR 38 0.91% FNS 38 0.91% F5H/CYP84A 35 0.84% G8O/G8H 34 0.82% BBE 31 0.74% SLS 30 0.72% PYKS 29 0.7% COMT 29 0.7% CYP90D1 28 0.67% LAC 27 0.65% ANR 25 0.6% RAS 25 0.6% 7DLH 24 0.58% F3'5'H/CYP75A 23 0.55% TAT 23 0.55% BR6OX1/CYP85A1 23 0.55% HCT 22 0.53% CCR 22 0.53% IO 20 0.48% GS 20 0.48% NCS 19 0.46% LAMT 19 0.46% CPD/CYP90A1 19 0.46% GGPPS 19 0.46% 16OMT 18 0.43% 8HGO 17 0.41% DFR 16 0.38% SQE 16 0.38% ANS/LDOX 15 0.36% CPR 15 0.36% CNMT 14 0.34% ROT3/CYP90C1 14 0.34% COR 13 0.31% CYP51G1 13 0.31% PMT 11 0.26% FPPS 11 0.26% MPO 10 0.24% AACT 10 0.24% PAL 9 0.22% CCoAOMT 8 0.19% HPPR 8 0.19% SMO1/SMO2 8 0.19% CHI 7 0.17% DWF7 7 0.17% MVK 7 0.17% CYP80B1 6 0.14% PMK 6 0.14% SQS/FDFT1 5 0.12% DET2 5 0.12% MVD 5 0.12% DXS 5 0.12% TDC 4 0.1% CYP719 4 0.1% CHS 4 0.1% DWF1 4 0.1% CYP80F1 3 0.07% MCT/IspD 3 0.07% ADC 2 0.05% TYDC_DDC 2 0.05% ISY 2 0.05% FLS 2 0.05% HYD1 2 0.05% HMGR 2 0.05% IDI 2 0.05% CMK/IspE 2 0.05% 6OMT_4OMT_SOMT 1 0.02% DWF5 1 0.02% FK 1 0.02% CPI1 1 0.02% MDS/IspF 1 0.02% HDR/IspH 1 0.02% HMGS 1 0.02% HDS/IspG 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 556 20 BAHD (247) View species results
Alkaloid pathway 416 19 NMT (83) View species results
Phenylpropanoid pathway 320 11 POD (141) View species results
Flavonoid pathway 190 10 UFGT (125) View species results
Steroid pathway 143 11 SMT1/SMT2/SMT3 (56) View species results
Rosmarinic acid pathway 132 7 C4H (54) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1577 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 337 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Chir06G0033670.1 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
Chir06G0034860.1 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
Chir06G0037320.1 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
Chir07G0006360.1 Alkaloid TRI/TRII low borderline TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
Chir08G0003650.1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Chir08G0005540.1 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Chir08G0010560.1 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST