PlantSME Plant secondary metabolism enzyme database

Carex cristatella (carex_cristatella)

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Imported from atlas release summary for Carex cristatella.

1603
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.94% Alkaloid pathway 20.59% Phenylpropanoid pathway 18.9% Flavonoid pathway 17.28% Steroid pathway 6.24% Rosmarinic acid pathway 6.05%
Family Distribution
UGT 6.82% 7DLGT 6.55% UFGT 6.41% BAHD 6.35% C4H 5.52% POD 4.82% C3'H/CYP98A 4.11% 4CL 3.88%
Other Families 55.54%
More Families (95)
IFS 102 3.0% CYP76 93 2.73% F3H 89 2.62% T3O 80 2.35% CAD 71 2.09% NMT 68 2.0% SMT1/SMT2/SMT3 61 1.79% CAS 57 1.67% CODM/T6ODM 46 1.35% TPS 46 1.35% HCT 45 1.32% DWF4/CYP90B1 44 1.29% BR6OX2/CYP85A2 42 1.23% STR 41 1.2% H6H 40 1.18% RAS 39 1.15% GES 38 1.12% COMT 38 1.12% PMT 37 1.09% T16H 35 1.03% CSE 35 1.03% G8O/G8H 34 1.0% F3'H/CYP75B 34 1.0% 16OMT 33 0.97% IFR 33 0.97% TRI/TRII 32 0.94% PYKS 31 0.91% FNS 28 0.82% SGD 27 0.79% COR 26 0.76% GS 26 0.76% CYP71 26 0.76% ANR 25 0.73% CYP90D1 19 0.56% NCS 18 0.53% 8HGO 16 0.47% TAT 15 0.44% CCR 14 0.41% LAC 14 0.41% CPD/CYP90A1 13 0.38% 7DLH 12 0.35% DFR 11 0.32% GGPPS 11 0.32% BBE 10 0.29% LAMT 10 0.29% F3'5'H/CYP75A 10 0.29% CHS 10 0.29% F5H/CYP84A 10 0.29% FPPS 10 0.29% CNMT 9 0.26% IO 9 0.26% PAL 9 0.26% CYP51G1 9 0.26% BR6OX1/CYP85A1 9 0.26% SLS 8 0.24% ANS/LDOX 8 0.24% CHI 8 0.24% HPPR 8 0.24% AACT 8 0.24% CYP719 7 0.21% CPR 6 0.18% TYDC_DDC 5 0.15% CCoAOMT 5 0.15% SQS/FDFT1 5 0.15% DET2 5 0.15% MPO 4 0.12% CYP80B1 4 0.12% ROT3/CYP90C1 4 0.12% SMO1/SMO2 4 0.12% HMGR 4 0.12% CMK/IspE 4 0.12% MVK 4 0.12% ISY 3 0.09% HYD1 3 0.09% DWF1 3 0.09% PMK 3 0.09% MVD 3 0.09% TDC 2 0.06% MDS/IspF 2 0.06% DXS 2 0.06% HDR/IspH 2 0.06% IDI 2 0.06% MCT/IspD 2 0.06% 6OMT_4OMT_SOMT 1 0.03% ADC 1 0.03% CYP80F1 1 0.03% FLS 1 0.03% DWF5 1 0.03% SQE 1 0.03% FK 1 0.03% CPI1 1 0.03% DWF7 1 0.03% HMGS 1 0.03% DXR 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 496 20 UGT (217) View species results
Alkaloid pathway 330 21 7DLGT (91) View species results
Phenylpropanoid pathway 303 12 POD (147) View species results
Flavonoid pathway 277 10 UFGT (207) View species results
Steroid pathway 100 13 CAS (45) View species results
Rosmarinic acid pathway 97 7 4CL (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 933 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 300 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
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Gene Pathway Family Confidence Status Best Target
Ccri02g07700.1 Flavonoid CHI medium pass CHI__00004__sp_P11650_CFI1_PETHY
Ccri02g07710.1 Flavonoid CHI medium pass CHI__00003__sp_O65333_CFI_ELAUM
Ccri02g07720.1 Flavonoid CHI medium pass CHI__00015__sp_Q8S3X0_CFI_HORVU
Ccri05g04190.1 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
Ccri13g05410.1 Flavonoid CHI medium pass CHI__00012__sp_Q8H0G1_CFI2_LOTJA
Ccri22g04630.1 Flavonoid CHI low borderline CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU
Ccri22g04650.1 Flavonoid CHI medium pass CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU
Ccri27g05030.1 Flavonoid CHI medium pass CHI__00012__sp_Q8H0G1_CFI2_LOTJA