Carex cristatella (carex_cristatella)
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Imported from atlas release summary for Carex cristatella.
1603
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1603
Candidate Genes
UGT
6.82%
7DLGT
6.55%
UFGT
6.41%
BAHD
6.35%
C4H
5.52%
POD
4.82%
C3'H/CYP98A
4.11%
4CL
3.88%
Other Families
55.54%
More Families (95)
IFS
102
3.0%
CYP76
93
2.73%
F3H
89
2.62%
T3O
80
2.35%
CAD
71
2.09%
NMT
68
2.0%
SMT1/SMT2/SMT3
61
1.79%
CAS
57
1.67%
CODM/T6ODM
46
1.35%
TPS
46
1.35%
HCT
45
1.32%
DWF4/CYP90B1
44
1.29%
BR6OX2/CYP85A2
42
1.23%
STR
41
1.2%
H6H
40
1.18%
RAS
39
1.15%
GES
38
1.12%
COMT
38
1.12%
PMT
37
1.09%
T16H
35
1.03%
CSE
35
1.03%
G8O/G8H
34
1.0%
F3'H/CYP75B
34
1.0%
16OMT
33
0.97%
IFR
33
0.97%
TRI/TRII
32
0.94%
PYKS
31
0.91%
FNS
28
0.82%
SGD
27
0.79%
COR
26
0.76%
GS
26
0.76%
CYP71
26
0.76%
ANR
25
0.73%
CYP90D1
19
0.56%
NCS
18
0.53%
8HGO
16
0.47%
TAT
15
0.44%
CCR
14
0.41%
LAC
14
0.41%
CPD/CYP90A1
13
0.38%
7DLH
12
0.35%
DFR
11
0.32%
GGPPS
11
0.32%
BBE
10
0.29%
LAMT
10
0.29%
F3'5'H/CYP75A
10
0.29%
CHS
10
0.29%
F5H/CYP84A
10
0.29%
FPPS
10
0.29%
CNMT
9
0.26%
IO
9
0.26%
PAL
9
0.26%
CYP51G1
9
0.26%
BR6OX1/CYP85A1
9
0.26%
SLS
8
0.24%
ANS/LDOX
8
0.24%
CHI
8
0.24%
HPPR
8
0.24%
AACT
8
0.24%
CYP719
7
0.21%
CPR
6
0.18%
TYDC_DDC
5
0.15%
CCoAOMT
5
0.15%
SQS/FDFT1
5
0.15%
DET2
5
0.15%
MPO
4
0.12%
CYP80B1
4
0.12%
ROT3/CYP90C1
4
0.12%
SMO1/SMO2
4
0.12%
HMGR
4
0.12%
CMK/IspE
4
0.12%
MVK
4
0.12%
ISY
3
0.09%
HYD1
3
0.09%
DWF1
3
0.09%
PMK
3
0.09%
MVD
3
0.09%
TDC
2
0.06%
MDS/IspF
2
0.06%
DXS
2
0.06%
HDR/IspH
2
0.06%
IDI
2
0.06%
MCT/IspD
2
0.06%
6OMT_4OMT_SOMT
1
0.03%
ADC
1
0.03%
CYP80F1
1
0.03%
FLS
1
0.03%
DWF5
1
0.03%
SQE
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
DWF7
1
0.03%
HMGS
1
0.03%
DXR
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 496 | 20 | UGT (217) | View species results |
| Alkaloid pathway | 330 | 21 | 7DLGT (91) | View species results |
| Phenylpropanoid pathway | 303 | 12 | POD (147) | View species results |
| Flavonoid pathway | 277 | 10 | UFGT (207) | View species results |
| Steroid pathway | 100 | 13 | CAS (45) | View species results |
| Rosmarinic acid pathway | 97 | 7 | 4CL (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 933 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 300 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ccri01g05430.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccri02g04220.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccri02g06820.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccri02g08220.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccri02g09190.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccri03g10890.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccri04g01960.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccri04g02580.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccri04g02690.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccri04g08740.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccri04g08750.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccri06g00240.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccri06g04670.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccri12g00710.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccri12g01560.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Ccri12g02890.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Ccri13g01450.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Ccri13g02730.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Ccri13g06380.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccri13g06390.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccri13g06400.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccri13g06890.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccri15g02530.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccri15g02540.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccri20g05650.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccri22g06600.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccri24g04310.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccri25g05840.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Ccri25g05850.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Ccri28g05370.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccri28g05380.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Ccri29g05410.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |