PlantSME Plant secondary metabolism enzyme database

Carica papaya (carica_papaya)

Imported from atlas release summary for Carica papaya.

1083
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.44% Alkaloid pathway 23.08% Phenylpropanoid pathway 22.25% Flavonoid pathway 11.82% Rosmarinic acid pathway 9.14% Steroid pathway 5.26%
Family Distribution
BAHD 6.36% C3'H/CYP98A 6.13% C4H 6.05% IFS 4.25% POD 4.1% 4CL 3.91% CYP76 3.56% T3O 3.52%
Other Families 62.12%
More Families (96)
UGT 91 3.49% 7DLGT 86 3.29% UFGT 83 3.18% F3H 74 2.83% NMT 67 2.57% DWF4/CYP90B1 58 2.22% STR 51 1.95% H6H 48 1.84% CAD 45 1.72% BR6OX2/CYP85A2 45 1.72% CSE 44 1.69% F3'H/CYP75B 39 1.49% TRI/TRII 36 1.38% CYP71 36 1.38% CODM/T6ODM 33 1.26% SMT1/SMT2/SMT3 33 1.26% LAC 32 1.23% HCT 30 1.15% GS 25 0.96% T16H 25 0.96% CAS 25 0.96% SGD 24 0.92% IFR 24 0.92% PYKS 23 0.88% TPS 23 0.88% BBE 22 0.84% CYP90D1 22 0.84% GES 20 0.77% RAS 20 0.77% LAMT 19 0.73% ANR 18 0.69% TAT 17 0.65% PMT 16 0.61% BR6OX1/CYP85A1 16 0.61% 7DLH 15 0.57% F3'5'H/CYP75A 15 0.57% PAL 15 0.57% SLS 14 0.54% 8HGO 14 0.54% COR 14 0.54% COMT 14 0.54% IO 13 0.5% CYP51G1 12 0.46% NCS 11 0.42% CCR 11 0.42% G8O/G8H 10 0.38% 16OMT 10 0.38% FNS 10 0.38% FPPS 10 0.38% ROT3/CYP90C1 9 0.34% CPD/CYP90A1 9 0.34% CNMT 8 0.31% CYP719 8 0.31% ANS/LDOX 8 0.31% TYDC_DDC 6 0.23% MPO 6 0.23% CHS 6 0.23% F5H/CYP84A 6 0.23% SQS/FDFT1 6 0.23% CHI 5 0.19% FLS 5 0.19% GGPPS 5 0.19% AACT 5 0.19% CYP80F1 4 0.15% DFR 4 0.15% CCoAOMT 4 0.15% CPR 4 0.15% HPPR 4 0.15% DET2 4 0.15% MVK 4 0.15% ISY 3 0.11% SMO1/SMO2 3 0.11% FK 3 0.11% HMGR 3 0.11% MVD 3 0.11% DXS 3 0.11% XMT_MXMT_DXMT 2 0.08% CYP80B1 2 0.08% ADC 2 0.08% SQE 2 0.08% MCT/IspD 2 0.08% PMK 2 0.08% ODC 1 0.04% 6OMT_4OMT_SOMT 1 0.04% DWF7 1 0.04% HYD1 1 0.04% DWF5 1 0.04% DWF1 1 0.04% CPI1 1 0.04% IDI 1 0.04% HDS/IspG 1 0.04% HMGS 1 0.04% MDS/IspF 1 0.04% CMK/IspE 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 308 19 BAHD (133) View species results
Alkaloid pathway 250 18 7DLGT (49) View species results
Phenylpropanoid pathway 241 11 POD (105) View species results
Flavonoid pathway 128 9 UFGT (81) View species results
Rosmarinic acid pathway 99 7 C4H (45) View species results
Steroid pathway 57 13 CAS (21) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 972 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 216 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
carica_papaya_GWHPBFSC017308 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC017309 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC017418 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC017540 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC017608 Flavonoid F3H low borderline
carica_papaya_GWHPBFSC018371 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC018772 Flavonoid F3H low borderline
carica_papaya_GWHPBFSC018773 Flavonoid F3H low borderline
carica_papaya_GWHPBFSC018774 Flavonoid F3H low borderline
carica_papaya_GWHPBFSC019134 Flavonoid F3H low borderline
carica_papaya_GWHPBFSC019137 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC019813 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC020327 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC020721 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC020722 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC020804 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC021555 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC021710 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC021711 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC022495 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC023112 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC023152 Flavonoid F3H low borderline
carica_papaya_GWHPBFSC023308 Flavonoid F3H medium borderline
carica_papaya_GWHPBFSC024120 Flavonoid F3H medium borderline