PlantSME Plant secondary metabolism enzyme database

Carica papaya (carica_papaya)

Imported from atlas release summary for Carica papaya.

1083
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.44% Alkaloid pathway 23.08% Phenylpropanoid pathway 22.25% Flavonoid pathway 11.82% Rosmarinic acid pathway 9.14% Steroid pathway 5.26%
Family Distribution
BAHD 6.36% C3'H/CYP98A 6.13% C4H 6.05% IFS 4.25% POD 4.1% 4CL 3.91% CYP76 3.56% T3O 3.52%
Other Families 62.12%
More Families (96)
UGT 91 3.49% 7DLGT 86 3.29% UFGT 83 3.18% F3H 74 2.83% NMT 67 2.57% DWF4/CYP90B1 58 2.22% STR 51 1.95% H6H 48 1.84% CAD 45 1.72% BR6OX2/CYP85A2 45 1.72% CSE 44 1.69% F3'H/CYP75B 39 1.49% TRI/TRII 36 1.38% CYP71 36 1.38% CODM/T6ODM 33 1.26% SMT1/SMT2/SMT3 33 1.26% LAC 32 1.23% HCT 30 1.15% GS 25 0.96% T16H 25 0.96% CAS 25 0.96% SGD 24 0.92% IFR 24 0.92% PYKS 23 0.88% TPS 23 0.88% BBE 22 0.84% CYP90D1 22 0.84% GES 20 0.77% RAS 20 0.77% LAMT 19 0.73% ANR 18 0.69% TAT 17 0.65% PMT 16 0.61% BR6OX1/CYP85A1 16 0.61% 7DLH 15 0.57% F3'5'H/CYP75A 15 0.57% PAL 15 0.57% SLS 14 0.54% 8HGO 14 0.54% COR 14 0.54% COMT 14 0.54% IO 13 0.5% CYP51G1 12 0.46% NCS 11 0.42% CCR 11 0.42% G8O/G8H 10 0.38% 16OMT 10 0.38% FNS 10 0.38% FPPS 10 0.38% ROT3/CYP90C1 9 0.34% CPD/CYP90A1 9 0.34% CNMT 8 0.31% CYP719 8 0.31% ANS/LDOX 8 0.31% TYDC_DDC 6 0.23% MPO 6 0.23% CHS 6 0.23% F5H/CYP84A 6 0.23% SQS/FDFT1 6 0.23% CHI 5 0.19% FLS 5 0.19% GGPPS 5 0.19% AACT 5 0.19% CYP80F1 4 0.15% DFR 4 0.15% CCoAOMT 4 0.15% CPR 4 0.15% HPPR 4 0.15% DET2 4 0.15% MVK 4 0.15% ISY 3 0.11% SMO1/SMO2 3 0.11% FK 3 0.11% HMGR 3 0.11% MVD 3 0.11% DXS 3 0.11% XMT_MXMT_DXMT 2 0.08% CYP80B1 2 0.08% ADC 2 0.08% SQE 2 0.08% MCT/IspD 2 0.08% PMK 2 0.08% ODC 1 0.04% 6OMT_4OMT_SOMT 1 0.04% DWF7 1 0.04% HYD1 1 0.04% DWF5 1 0.04% DWF1 1 0.04% CPI1 1 0.04% IDI 1 0.04% HDS/IspG 1 0.04% HMGS 1 0.04% MDS/IspF 1 0.04% CMK/IspE 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 308 19 BAHD (133) View species results
Alkaloid pathway 250 18 7DLGT (49) View species results
Phenylpropanoid pathway 241 11 POD (105) View species results
Flavonoid pathway 128 9 UFGT (81) View species results
Rosmarinic acid pathway 99 7 C4H (45) View species results
Steroid pathway 57 13 CAS (21) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 972 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 216 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
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Gene Pathway Family Confidence Status
carica_papaya_GWHPBFSC000170 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC000172 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC001924 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC003768 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC003769 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC004722 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC006411 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC006412 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC006413 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC006415 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC011669 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC011984 Alkaloid SGD low borderline
carica_papaya_GWHPBFSC011985 Alkaloid SGD low borderline
carica_papaya_GWHPBFSC012247 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC017436 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC020450 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC020455 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC020457 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC020458 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC020703 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC022791 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC024068 Alkaloid SGD medium pass
carica_papaya_GWHPBFSC024432 Alkaloid SGD low borderline
carica_papaya_GWHPBFSC024434 Alkaloid SGD medium pass