Carica papaya (carica_papaya)
Imported from atlas release summary for Carica papaya.
1083
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1083
Candidate Genes
BAHD
6.36%
C3'H/CYP98A
6.13%
C4H
6.05%
IFS
4.25%
POD
4.1%
4CL
3.91%
CYP76
3.56%
T3O
3.52%
Other Families
62.12%
More Families (96)
UGT
91
3.49%
7DLGT
86
3.29%
UFGT
83
3.18%
F3H
74
2.83%
NMT
67
2.57%
DWF4/CYP90B1
58
2.22%
STR
51
1.95%
H6H
48
1.84%
CAD
45
1.72%
BR6OX2/CYP85A2
45
1.72%
CSE
44
1.69%
F3'H/CYP75B
39
1.49%
TRI/TRII
36
1.38%
CYP71
36
1.38%
CODM/T6ODM
33
1.26%
SMT1/SMT2/SMT3
33
1.26%
LAC
32
1.23%
HCT
30
1.15%
GS
25
0.96%
T16H
25
0.96%
CAS
25
0.96%
SGD
24
0.92%
IFR
24
0.92%
PYKS
23
0.88%
TPS
23
0.88%
BBE
22
0.84%
CYP90D1
22
0.84%
GES
20
0.77%
RAS
20
0.77%
LAMT
19
0.73%
ANR
18
0.69%
TAT
17
0.65%
PMT
16
0.61%
BR6OX1/CYP85A1
16
0.61%
7DLH
15
0.57%
F3'5'H/CYP75A
15
0.57%
PAL
15
0.57%
SLS
14
0.54%
8HGO
14
0.54%
COR
14
0.54%
COMT
14
0.54%
IO
13
0.5%
CYP51G1
12
0.46%
NCS
11
0.42%
CCR
11
0.42%
G8O/G8H
10
0.38%
16OMT
10
0.38%
FNS
10
0.38%
FPPS
10
0.38%
ROT3/CYP90C1
9
0.34%
CPD/CYP90A1
9
0.34%
CNMT
8
0.31%
CYP719
8
0.31%
ANS/LDOX
8
0.31%
TYDC_DDC
6
0.23%
MPO
6
0.23%
CHS
6
0.23%
F5H/CYP84A
6
0.23%
SQS/FDFT1
6
0.23%
CHI
5
0.19%
FLS
5
0.19%
GGPPS
5
0.19%
AACT
5
0.19%
CYP80F1
4
0.15%
DFR
4
0.15%
CCoAOMT
4
0.15%
CPR
4
0.15%
HPPR
4
0.15%
DET2
4
0.15%
MVK
4
0.15%
ISY
3
0.11%
SMO1/SMO2
3
0.11%
FK
3
0.11%
HMGR
3
0.11%
MVD
3
0.11%
DXS
3
0.11%
XMT_MXMT_DXMT
2
0.08%
CYP80B1
2
0.08%
ADC
2
0.08%
SQE
2
0.08%
MCT/IspD
2
0.08%
PMK
2
0.08%
ODC
1
0.04%
6OMT_4OMT_SOMT
1
0.04%
DWF7
1
0.04%
HYD1
1
0.04%
DWF5
1
0.04%
DWF1
1
0.04%
CPI1
1
0.04%
IDI
1
0.04%
HDS/IspG
1
0.04%
HMGS
1
0.04%
MDS/IspF
1
0.04%
CMK/IspE
1
0.04%
HDR/IspH
1
0.04%
DXR
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 308 | 19 | BAHD (133) | View species results |
| Alkaloid pathway | 250 | 18 | 7DLGT (49) | View species results |
| Phenylpropanoid pathway | 241 | 11 | POD (105) | View species results |
| Flavonoid pathway | 128 | 9 | UFGT (81) | View species results |
| Rosmarinic acid pathway | 99 | 7 | C4H (45) | View species results |
| Steroid pathway | 57 | 13 | CAS (21) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 972 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 216 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| carica_papaya_GWHPBFSC000662 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| carica_papaya_GWHPBFSC003070 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| carica_papaya_GWHPBFSC004151 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| carica_papaya_GWHPBFSC005069 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| carica_papaya_GWHPBFSC005318 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| carica_papaya_GWHPBFSC005319 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| carica_papaya_GWHPBFSC005565 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| carica_papaya_GWHPBFSC005566 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| carica_papaya_GWHPBFSC005567 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| carica_papaya_GWHPBFSC006347 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| carica_papaya_GWHPBFSC006348 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| carica_papaya_GWHPBFSC010194 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| carica_papaya_GWHPBFSC010195 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| carica_papaya_GWHPBFSC012169 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| carica_papaya_GWHPBFSC013642 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| carica_papaya_GWHPBFSC013643 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| carica_papaya_GWHPBFSC014774 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| carica_papaya_GWHPBFSC016325 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| carica_papaya_GWHPBFSC016529 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| carica_papaya_GWHPBFSC016898 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| carica_papaya_GWHPBFSC017555 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| carica_papaya_GWHPBFSC017556 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| carica_papaya_GWHPBFSC017557 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| carica_papaya_GWHPBFSC017558 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| carica_papaya_GWHPBFSC020065 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| carica_papaya_GWHPBFSC020361 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| carica_papaya_GWHPBFSC020625 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| carica_papaya_GWHPBFSC021438 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| carica_papaya_GWHPBFSC021743 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| carica_papaya_GWHPBFSC021744 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| carica_papaya_GWHPBFSC021745 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| carica_papaya_GWHPBFSC021746 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| carica_papaya_GWHPBFSC021747 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| carica_papaya_GWHPBFSC021748 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| carica_papaya_GWHPBFSC021749 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| carica_papaya_GWHPBFSC024016 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |