PlantSME Plant secondary metabolism enzyme database

Carpinus fangiana (carpinus_fangiana)

Imported from atlas release summary for Carpinus fangiana.

1423
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.15% Alkaloid pathway 23.05% Phenylpropanoid pathway 21.57% Flavonoid pathway 10.68% Rosmarinic acid pathway 8.43% Steroid pathway 6.11%
Family Distribution
C4H 6.5% C3'H/CYP98A 5.9% BAHD 5.61% 4CL 4.69% UGT 4.02% CYP76 3.85% 7DLGT 3.23% IFS 3.21%
Other Families 62.99%
More Families (94)
POD 114 3.07% T3O 105 2.83% F3H 99 2.67% UFGT 94 2.53% DWF4/CYP90B1 86 2.32% CAD 84 2.26% F3'H/CYP75B 82 2.21% NMT 69 1.86% STR 67 1.81% CODM/T6ODM 63 1.7% BR6OX2/CYP85A2 62 1.67% GS 60 1.62% TRI/TRII 58 1.56% G8O/G8H 57 1.54% LAC 53 1.43% SMT1/SMT2/SMT3 53 1.43% CAS 48 1.29% COMT 47 1.27% HCT 46 1.24% H6H 43 1.16% FNS 39 1.05% PMT 38 1.02% CYP71 37 1.0% T16H 36 0.97% GES 35 0.94% IFR 35 0.94% TPS 35 0.94% TAT 31 0.84% BBE 28 0.75% PYKS 27 0.73% RAS 27 0.73% 16OMT 26 0.7% COR 26 0.7% 7DLH 25 0.67% F3'5'H/CYP75A 23 0.62% ANR 22 0.59% SGD 21 0.57% IO 19 0.51% CCR 19 0.51% PAL 18 0.49% CYP90D1 17 0.46% CPD/CYP90A1 17 0.46% CSE 16 0.43% BR6OX1/CYP85A1 16 0.43% NCS 15 0.4% SLS 14 0.38% 8HGO 14 0.38% DFR 14 0.38% FPPS 12 0.32% CNMT 11 0.3% ANS/LDOX 11 0.3% F5H/CYP84A 11 0.3% CYP51G1 11 0.3% MPO 10 0.27% CCoAOMT 10 0.27% AACT 10 0.27% CYP719 9 0.24% LAMT 9 0.24% CYP80B1 9 0.24% CHS 9 0.24% CPR 9 0.24% SQS/FDFT1 9 0.24% HMGR 8 0.22% TYDC_DDC 7 0.19% 6OMT_4OMT_SOMT 7 0.19% HPPR 7 0.19% ROT3/CYP90C1 7 0.19% ISY 6 0.16% GGPPS 6 0.16% ADC 5 0.13% SQE 5 0.13% MVK 5 0.13% MVD 5 0.13% TDC 4 0.11% CYP80F1 4 0.11% CHI 4 0.11% HYD1 4 0.11% SMO1/SMO2 4 0.11% DXS 4 0.11% DET2 3 0.08% HMGS 3 0.08% MDS/IspF 3 0.08% ODC 2 0.05% DWF5 2 0.05% MCT/IspD 2 0.05% HDS/IspG 2 0.05% XMT_MXMT_DXMT 1 0.03% FK 1 0.03% DWF1 1 0.03% PMK 1 0.03% HDR/IspH 1 0.03% IDI 1 0.03% CMK/IspE 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 429 18 BAHD (160) View species results
Alkaloid pathway 328 23 T3O (43) View species results
Phenylpropanoid pathway 307 12 POD (99) View species results
Flavonoid pathway 152 11 UFGT (77) View species results
Rosmarinic acid pathway 120 7 4CL (35) View species results
Steroid pathway 87 9 CAS (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1369 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 281 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
Cfan01G0016590.1 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Cfan01G0016600.1 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Cfan01G0030360.1 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Cfan01G0030370.1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Cfan01G0030390.1 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Cfan07G0011500.1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Cfan01G0016590.1 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Cfan01G0016600.1 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Cfan01G0030360.1 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Cfan01G0030370.1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Cfan01G0030390.1 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Cfan07G0011500.1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Cfan01G0016590.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Cfan01G0016600.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Cfan01G0030360.1 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Cfan01G0030370.1 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Cfan01G0030390.1 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Cfan07G0011500.1 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH