Carpinus fangiana (carpinus_fangiana)
Imported from atlas release summary for Carpinus fangiana.
1423
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1423
Candidate Genes
C4H
6.5%
C3'H/CYP98A
5.9%
BAHD
5.61%
4CL
4.69%
UGT
4.02%
CYP76
3.85%
7DLGT
3.23%
IFS
3.21%
Other Families
62.99%
More Families (94)
POD
114
3.07%
T3O
105
2.83%
F3H
99
2.67%
UFGT
94
2.53%
DWF4/CYP90B1
86
2.32%
CAD
84
2.26%
F3'H/CYP75B
82
2.21%
NMT
69
1.86%
STR
67
1.81%
CODM/T6ODM
63
1.7%
BR6OX2/CYP85A2
62
1.67%
GS
60
1.62%
TRI/TRII
58
1.56%
G8O/G8H
57
1.54%
LAC
53
1.43%
SMT1/SMT2/SMT3
53
1.43%
CAS
48
1.29%
COMT
47
1.27%
HCT
46
1.24%
H6H
43
1.16%
FNS
39
1.05%
PMT
38
1.02%
CYP71
37
1.0%
T16H
36
0.97%
GES
35
0.94%
IFR
35
0.94%
TPS
35
0.94%
TAT
31
0.84%
BBE
28
0.75%
PYKS
27
0.73%
RAS
27
0.73%
16OMT
26
0.7%
COR
26
0.7%
7DLH
25
0.67%
F3'5'H/CYP75A
23
0.62%
ANR
22
0.59%
SGD
21
0.57%
IO
19
0.51%
CCR
19
0.51%
PAL
18
0.49%
CYP90D1
17
0.46%
CPD/CYP90A1
17
0.46%
CSE
16
0.43%
BR6OX1/CYP85A1
16
0.43%
NCS
15
0.4%
SLS
14
0.38%
8HGO
14
0.38%
DFR
14
0.38%
FPPS
12
0.32%
CNMT
11
0.3%
ANS/LDOX
11
0.3%
F5H/CYP84A
11
0.3%
CYP51G1
11
0.3%
MPO
10
0.27%
CCoAOMT
10
0.27%
AACT
10
0.27%
CYP719
9
0.24%
LAMT
9
0.24%
CYP80B1
9
0.24%
CHS
9
0.24%
CPR
9
0.24%
SQS/FDFT1
9
0.24%
HMGR
8
0.22%
TYDC_DDC
7
0.19%
6OMT_4OMT_SOMT
7
0.19%
HPPR
7
0.19%
ROT3/CYP90C1
7
0.19%
ISY
6
0.16%
GGPPS
6
0.16%
ADC
5
0.13%
SQE
5
0.13%
MVK
5
0.13%
MVD
5
0.13%
TDC
4
0.11%
CYP80F1
4
0.11%
CHI
4
0.11%
HYD1
4
0.11%
SMO1/SMO2
4
0.11%
DXS
4
0.11%
DET2
3
0.08%
HMGS
3
0.08%
MDS/IspF
3
0.08%
ODC
2
0.05%
DWF5
2
0.05%
MCT/IspD
2
0.05%
HDS/IspG
2
0.05%
XMT_MXMT_DXMT
1
0.03%
FK
1
0.03%
DWF1
1
0.03%
PMK
1
0.03%
HDR/IspH
1
0.03%
IDI
1
0.03%
CMK/IspE
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 429 | 18 | BAHD (160) | View species results |
| Alkaloid pathway | 328 | 23 | T3O (43) | View species results |
| Phenylpropanoid pathway | 307 | 12 | POD (99) | View species results |
| Flavonoid pathway | 152 | 11 | UFGT (77) | View species results |
| Rosmarinic acid pathway | 120 | 7 | 4CL (35) | View species results |
| Steroid pathway | 87 | 9 | CAS (40) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1369 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 281 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cfan01G0003960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan01G0015570.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan01G0016640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan01G0020370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan01G0020380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan01G0020390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan01G0020400.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan01G0021770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan01G0026200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan01G0029100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan01G0029740.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cfan01G0033070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan01G0036520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan02G0004780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan02G0004800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan02G0010340.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Cfan02G0010410.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Cfan02G0012560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan02G0012580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan02G0023480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan02G0023490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan02G0023500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan02G0024250.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan02G0026550.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cfan02G0026560.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cfan02G0026570.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cfan03G0014590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan03G0016590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan03G0016850.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cfan03G0016860.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cfan04G0003240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan04G0003250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan04G0003700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan04G0005890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan04G0007290.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cfan04G0014750.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan04G0017630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan04G0018040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan04G0022100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan05G0004280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan05G0013340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan05G0013360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan05G0013370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan05G0013380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan05G0019820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan06G0010020.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Cfan06G0021350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan07G0001400.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan07G0003830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Cfan07G0005030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |