PlantSME Plant secondary metabolism enzyme database

Carpinus fangiana (carpinus_fangiana)

Imported from atlas release summary for Carpinus fangiana.

1423
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.15% Alkaloid pathway 23.05% Phenylpropanoid pathway 21.57% Flavonoid pathway 10.68% Rosmarinic acid pathway 8.43% Steroid pathway 6.11%
Family Distribution
C4H 6.5% C3'H/CYP98A 5.9% BAHD 5.61% 4CL 4.69% UGT 4.02% CYP76 3.85% 7DLGT 3.23% IFS 3.21%
Other Families 62.99%
More Families (94)
POD 114 3.07% T3O 105 2.83% F3H 99 2.67% UFGT 94 2.53% DWF4/CYP90B1 86 2.32% CAD 84 2.26% F3'H/CYP75B 82 2.21% NMT 69 1.86% STR 67 1.81% CODM/T6ODM 63 1.7% BR6OX2/CYP85A2 62 1.67% GS 60 1.62% TRI/TRII 58 1.56% G8O/G8H 57 1.54% LAC 53 1.43% SMT1/SMT2/SMT3 53 1.43% CAS 48 1.29% COMT 47 1.27% HCT 46 1.24% H6H 43 1.16% FNS 39 1.05% PMT 38 1.02% CYP71 37 1.0% T16H 36 0.97% GES 35 0.94% IFR 35 0.94% TPS 35 0.94% TAT 31 0.84% BBE 28 0.75% PYKS 27 0.73% RAS 27 0.73% 16OMT 26 0.7% COR 26 0.7% 7DLH 25 0.67% F3'5'H/CYP75A 23 0.62% ANR 22 0.59% SGD 21 0.57% IO 19 0.51% CCR 19 0.51% PAL 18 0.49% CYP90D1 17 0.46% CPD/CYP90A1 17 0.46% CSE 16 0.43% BR6OX1/CYP85A1 16 0.43% NCS 15 0.4% SLS 14 0.38% 8HGO 14 0.38% DFR 14 0.38% FPPS 12 0.32% CNMT 11 0.3% ANS/LDOX 11 0.3% F5H/CYP84A 11 0.3% CYP51G1 11 0.3% MPO 10 0.27% CCoAOMT 10 0.27% AACT 10 0.27% CYP719 9 0.24% LAMT 9 0.24% CYP80B1 9 0.24% CHS 9 0.24% CPR 9 0.24% SQS/FDFT1 9 0.24% HMGR 8 0.22% TYDC_DDC 7 0.19% 6OMT_4OMT_SOMT 7 0.19% HPPR 7 0.19% ROT3/CYP90C1 7 0.19% ISY 6 0.16% GGPPS 6 0.16% ADC 5 0.13% SQE 5 0.13% MVK 5 0.13% MVD 5 0.13% TDC 4 0.11% CYP80F1 4 0.11% CHI 4 0.11% HYD1 4 0.11% SMO1/SMO2 4 0.11% DXS 4 0.11% DET2 3 0.08% HMGS 3 0.08% MDS/IspF 3 0.08% ODC 2 0.05% DWF5 2 0.05% MCT/IspD 2 0.05% HDS/IspG 2 0.05% XMT_MXMT_DXMT 1 0.03% FK 1 0.03% DWF1 1 0.03% PMK 1 0.03% HDR/IspH 1 0.03% IDI 1 0.03% CMK/IspE 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 429 18 BAHD (160) View species results
Alkaloid pathway 328 23 T3O (43) View species results
Phenylpropanoid pathway 307 12 POD (99) View species results
Flavonoid pathway 152 11 UFGT (77) View species results
Rosmarinic acid pathway 120 7 4CL (35) View species results
Steroid pathway 87 9 CAS (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1369 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 281 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
Cfan08G0022410.1 Phenylpropanoid POD medium pass POD__00010__sp_P84516_PER1_SORBI
Cfan08G0022420.1 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Cfanscaffold100002740.1 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Cfanscaffold100004020.1 Phenylpropanoid POD medium pass POD__00017__sp_Q75SY5_PRXQ_GENTR
Cfanscaffold1120008480.1 Phenylpropanoid POD medium pass POD__00007__sp_P0C5C9_REHYA_ORYSJ
Cfanscaffold120013820.1 Phenylpropanoid POD low borderline POD__00012__sp_Q10N21_APX1_ORYSJ
Cfanscaffold830054070.1 Phenylpropanoid POD low borderline POD__00011__sp_Q05431_APX1_ARATH
Cfanscaffold830054080.1 Phenylpropanoid POD medium pass POD__00005__sp_O22448_GPX5_CHLRE
Cfanscaffold90056900.1 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Cfanscaffold90058210.1 Phenylpropanoid POD low borderline POD__00021__sp_Q9LEH3_PER15_IPOBA
Cfanscaffold90058870.1 Phenylpropanoid POD medium pass POD__00002__sp_A5H8G4_PER1_MAIZE
Cfanscaffold90061540.1 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
Cfanscaffold90062320.1 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Cfanscaffold980063760.1 Phenylpropanoid POD low borderline POD__00028__sp_Q9ZVD5_AGO4_ARATH