PlantSME Plant secondary metabolism enzyme database

Castanea mollissima (castanea_mollissima)

Imported from atlas release summary for Castanea mollissima.

2491
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 33.76% Alkaloid pathway 22.48% Phenylpropanoid pathway 16.62% Flavonoid pathway 15.94% Rosmarinic acid pathway 6.18% Steroid pathway 5.02%
Family Distribution
C4H 7.19% UGT 6.93% 7DLGT 6.11% UFGT 5.81% BAHD 5.57% C3'H/CYP98A 4.68% CYP76 4.24% POD 2.95%
Other Families 56.51%
More Families (97)
IFS 163 2.88% 4CL 150 2.65% F3'H/CYP75B 120 2.12% G8O/G8H 119 2.1% F3H 117 2.07% T3O 104 1.84% DWF4/CYP90B1 94 1.66% CAD 88 1.56% NMT 87 1.54% STR 85 1.5% T16H 80 1.41% FNS 79 1.4% TRI/TRII 78 1.38% BR6OX2/CYP85A2 77 1.36% HCT 68 1.2% H6H 66 1.17% F5H/CYP84A 65 1.15% CAS 63 1.11% CODM/T6ODM 58 1.02% TAT 57 1.01% COMT 55 0.97% LAC 55 0.97% SMT1/SMT2/SMT3 54 0.95% CYP71 51 0.9% TPS 48 0.85% GES 46 0.81% GS 45 0.8% 7DLH 45 0.8% CSE 44 0.78% NCS 43 0.76% F3'5'H/CYP75A 43 0.76% BBE 42 0.74% IFR 41 0.72% SGD 40 0.71% 16OMT 37 0.65% ANR 35 0.62% CYP90D1 35 0.62% RAS 33 0.58% SLS 30 0.53% PMT 30 0.53% IO 29 0.51% CPD/CYP90A1 28 0.49% PYKS 26 0.46% LAMT 25 0.44% CCR 22 0.39% BR6OX1/CYP85A1 22 0.39% PAL 21 0.37% ISY 20 0.35% MPO 20 0.35% 8HGO 19 0.34% TYDC_DDC 18 0.32% COR 17 0.3% CYP80B1 17 0.3% CYP719 16 0.28% DFR 13 0.23% ROT3/CYP90C1 13 0.23% FPPS 12 0.21% CNMT 11 0.19% ANS/LDOX 11 0.19% GGPPS 11 0.19% 6OMT_4OMT_SOMT 10 0.18% HPPR 10 0.18% HMGR 9 0.16% CYP80F1 8 0.14% SQS/FDFT1 8 0.14% SQE 8 0.14% AACT 8 0.14% CCoAOMT 7 0.12% TDC 6 0.11% XMT_MXMT_DXMT 6 0.11% CYP51G1 6 0.11% DET2 6 0.11% DXS 6 0.11% CPR 5 0.09% MCT/IspD 5 0.09% CHS 4 0.07% MVD 4 0.07% ODC 3 0.05% CHI 3 0.05% SMO1/SMO2 3 0.05% MVK 3 0.05% DXR 3 0.05% CMK/IspE 3 0.05% HDR/IspH 3 0.05% IDI 3 0.05% FLS 2 0.04% CPI1 2 0.04% DWF5 2 0.04% HMGS 2 0.04% PMK 2 0.04% ADC 1 0.02% HYD1 1 0.02% DWF1 1 0.02% FK 1 0.02% DWF7 1 0.02% MDS/IspF 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 841 20 UGT (357) View species results
Alkaloid pathway 560 25 7DLGT (170) View species results
Phenylpropanoid pathway 414 13 POD (152) View species results
Flavonoid pathway 397 13 UFGT (302) View species results
Rosmarinic acid pathway 154 7 TAT (47) View species results
Steroid pathway 125 12 CAS (60) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2077 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 416 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GGPPS
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Gene Pathway Family Confidence Status Best Target
Cmolctg00200034580.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Cmolctg00310047570.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Cmolctg00690080880.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Cmolctg01320123960.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Cmolctg01700142460.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Cmolctg01820149280.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Cmolctg03360210710.1 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Cmolctg03380211260.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Cmolctg05430266170.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Cmolctg14590338670.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Cmolctg21150356030.1 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH