PlantSME Plant secondary metabolism enzyme database

Casuarina equisetifolia (casuarina_equisetifolia)

Imported from atlas release summary for Casuarina equisetifolia.

1816
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.97% Phenylpropanoid pathway 23.18% Alkaloid pathway 22.63% Flavonoid pathway 12.61% Rosmarinic acid pathway 7.65% Steroid pathway 5.95%
Family Distribution
C4H 6.56% C3'H/CYP98A 6.0% BAHD 4.51% UGT 4.46% POD 4.02% CYP76 3.95% 7DLGT 3.9% 4CL 3.88%
Other Families 62.72%
More Families (97)
UFGT 168 3.75% IFS 162 3.61% T3O 144 3.21% DWF4/CYP90B1 119 2.66% F3H 112 2.5% CAD 111 2.48% F3'H/CYP75B 98 2.19% TRI/TRII 77 1.72% BR6OX2/CYP85A2 70 1.56% GS 68 1.52% CODM/T6ODM 68 1.52% CAS 66 1.47% NMT 63 1.41% LAC 59 1.32% H6H 56 1.25% STR 55 1.23% SMT1/SMT2/SMT3 49 1.09% TPS 49 1.09% GES 47 1.05% T16H 47 1.05% HCT 47 1.05% CYP71 47 1.05% COMT 45 1.0% IFR 43 0.96% IO 42 0.94% CYP90D1 41 0.91% FNS 38 0.85% G8O/G8H 36 0.8% CSE 36 0.8% 16OMT 35 0.78% TAT 35 0.78% SGD 34 0.76% BR6OX1/CYP85A1 32 0.71% ANR 30 0.67% PYKS 26 0.58% F5H/CYP84A 26 0.58% 7DLH 24 0.54% 8HGO 23 0.51% SLS 23 0.51% CCR 23 0.51% NCS 22 0.49% COR 22 0.49% RAS 22 0.49% PMT 20 0.45% ROT3/CYP90C1 19 0.42% DFR 18 0.4% CPD/CYP90A1 17 0.38% LAMT 16 0.36% F3'5'H/CYP75A 16 0.36% CYP80B1 14 0.31% TYDC_DDC 13 0.29% CPR 13 0.29% CYP51G1 13 0.29% CNMT 12 0.27% PAL 12 0.27% ISY 10 0.22% CCoAOMT 10 0.22% SQS/FDFT1 10 0.22% GGPPS 10 0.22% MPO 9 0.2% BBE 8 0.18% ANS/LDOX 8 0.18% HPPR 8 0.18% DXS 8 0.18% FPPS 8 0.18% AACT 8 0.18% CHS 7 0.16% TDC 6 0.13% SQE 6 0.13% 6OMT_4OMT_SOMT 5 0.11% HMGR 5 0.11% MVD 5 0.11% CYP719 4 0.09% XMT_MXMT_DXMT 4 0.09% DET2 4 0.09% MVK 4 0.09% PMK 4 0.09% HMGS 4 0.09% CHI 3 0.07% HYD1 3 0.07% CMK/IspE 3 0.07% HDS/IspG 3 0.07% CYP80F1 2 0.04% FLS 2 0.04% FK 2 0.04% SMO1/SMO2 2 0.04% DWF5 2 0.04% MCT/IspD 2 0.04% ADC 1 0.02% ODC 1 0.02% CPI1 1 0.02% DWF1 1 0.02% DWF7 1 0.02% MDS/IspF 1 0.02% IDI 1 0.02% HDR/IspH 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 18 UGT (187) View species results
Phenylpropanoid pathway 421 11 POD (171) View species results
Alkaloid pathway 411 23 7DLGT (90) View species results
Flavonoid pathway 229 11 UFGT (152) View species results
Rosmarinic acid pathway 139 7 C4H (53) View species results
Steroid pathway 108 13 CAS (50) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1736 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 271 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
casuarina_equisetifolia_CCG009968 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
casuarina_equisetifolia_CCG009975 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
casuarina_equisetifolia_CCG009976 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
casuarina_equisetifolia_CCG009979 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
casuarina_equisetifolia_CCG012426 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
casuarina_equisetifolia_CCG012428 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
casuarina_equisetifolia_CCG012430 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
casuarina_equisetifolia_CCG013770 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
casuarina_equisetifolia_CCG013771 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
casuarina_equisetifolia_CCG013774 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
casuarina_equisetifolia_CCG013775 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
casuarina_equisetifolia_CCG014614 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
casuarina_equisetifolia_CCG014617 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO